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[191429_at] 7TM chemoreceptor, str family

Description F10D2.4 /REP_DB=WormBase Gene ID /WP=CE09315 /GEN=str-112 /TR=O16913 /GB=AAC48242.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 10      4grp_high_8_8 > 12      6grp_highest_nonorm > 80      6grp_total > 13      4grp_total > 20      6grp_cgc > 50      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 84.1
(-3)
P 		98.5
(-2)
P 		83.4
(-3)
P 		173.9
(3)
P 		91
B 124.7
(1.9)
P 		74.7
(-1.3)
P 		48.9
(-3)
A 		141.6
(3)
P 		93
C 103.9
(-0.6)
P 		111.6
(-0.2)
P 		52.8
(-3)
P 		180.2
(3)
P 		127
avr 104.2
(-0.5) 		94.9
(-1.1) 		61.7
(-3) 		165.2
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 283.9
(3)
P 		170.9
(-0.5)
P 		226.5
(1.2)
P 		227
(1.2)
P 		190.3
(0.1)
P 		91.5
(-3)
P 		192
B 216.6
(3)
P 		194
(2.1)
P 		160
(0.6)
P 		197.9
(2.2)
P 		178.5
(1.4)
P 		72.5
(-3)
P 		144
C 231.4
(3)
P 		190.8
(1.5)
P 		222.4
(2.7)
P 		206.6
(2.1)
P 		141.4
(-0.3)
P 		67.8
(-3)
P 		164
avr 244
(3) 		185.2
(0.9) 		203
(1.5) 		210.5
(1.8) 		170.1
(0.3) 		77.3
(-3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 30.6
(3)
P 		21.4
(-3)
P 		21.8
(-2.7)
P 		25.5
(-0.3)
P 		9
B 39.8
(3)
P 		18.5
(-1.5)
P 		11.3
(-3)
A 		30.2
(1)
P 		29
C 34.4
(3)
P 		32.1
(2.1)
P 		18.4
(-3)
P 		30.4
(1.5)
P 		16
avr 34.9
(3) 		24
(-0.7) 		17.2
(-3) 		28.7
(0.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 52.3
(1.7)
P 		60.8
(3)
P 		49.3
(1.2)
P 		57.6
(2.5)
P 		57.4
(2.5)
P 		22.3
(-3)
P 		39
B 75.4
(3)
P 		64.6
(1.7)
P 		38.9
(-1.5)
P 		52.4
(0.1)
P 		72.5
(2.6)
P 		27
(-3)
P 		48
C 85.8
(3)
P 		58.2
(0.4)
P 		56.6
(0.2)
P 		41.5
(-1.2)
P 		45.8
(-0.8)
P 		22.7
(-3)
P 		63
avr 71.2
(3) 		61.2
(1.7) 		48.3
(0.1) 		50.5
(0.4) 		58.6
(1.4) 		24
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12448
Sequence Type Exemplar sequence
Representative Public ID F10D2.4 NCBI
Target Description F10D2.4 /REP_DB=WormBase Gene ID /WP=CE09315 /GEN=str-112 /TR=O16913 /GB=AAC48242.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072408 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-112) (str-112) mRNA, complete cds. 11/11 None
SNAP00000033805 ENSEMBL cdna:SNAP chromosome:CEL140:V:7138919:7139851:-1 9/11 None
GENEFINDER00000033822 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7138919:7141009:-1 11/11 None
F10D2.4 ENSEMBL cdna:known chromosome:CEL140:V:7138919:7141009:-1 gene:F10D2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7138919-7141010(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-112
Ensembl F10D2.4
Entrez Gene 191997 Entrez gene
SwissProt O16913 EMBL-EBI
WormBase CE09315 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504809 Seven TM Receptor family member (str-112) [Caenorhabditis elegans] gb|AAC48242.1| Seven tm receptor protein 112 [Caenorhabditis elegans] 0.0
blast CAE72009 Hypothetical protein CBG19088 [Caenorhabditis briggsae] 1.0E-155
blast AAC48279 Odorant response abnormal protein 10 [Caenorhabditis elegans] ref|NP_509157.1| C53B7.5 [Caenorhabditis elegans] gb|AAB00117.1| olfactory receptor Odr-10 1.0E-141
blast NP_504809 Seven TM Receptor family member (str-112) [Caenorhabditis elegans] gb|AAC48242.1| Seven tm receptor protein 112 [Caenorhabditis elegans] 5.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.8E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-33
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.9E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504809.1 7 15-32,45-67,91-113,126-148,208-230,251-273,283-305
F10D2.4 7 15-32,45-67,91-113,126-148,208-230,251-273,283-305
SNAP00000033805 3 46-68,89-111,121-143
GENEFINDER00000033822 7 15-32,45-67,91-113,126-148,208-230,251-273,283-305
Sequence
Target Sequence 
>C. ELEGANS:191429_AT
attcctgtgactgcgtgggcaagtgtttcttactttttgtacccagacaccgagtacact
gaagcagcagttacatatgttctgaaaacacactacgaggtgatcaaaaaagaaaatgta
tcttatatcgcatacgtatactatcaatatgaaaatggggagcgtcacatctacataaaa
aatttgcttggctgctttgtacactacttcgttatgtcaatgacatttgtagttgtgttt
tactgcggattttctacatggtggacgattcgtgagcatcgtggagcatctgataggaca
cgtcacctgcatagacaattgtttaaggcacttgtatttcaaacccttgttccatcaata
tttatgtacatcccaactggtgtcatgttcatcgctccctttttcgacatcaacctgaat
gccaatgcaaacttcatcgttttttgctcatttctctatccaggtcttgacccactaatt
ctcatttttatcattcgcgaattcagggtcacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCTGTGACTGCGTGGGCAAGTG 626 7 433 Antisense
TACTTTTTGTACCCAGACACCGAGT 468 643 463 Antisense
TGGGGAGCGTCACATCTACATAAAA 323 553 588 Antisense
TTGCTTGGCTGCTTTGTACACTACT 303 703 616 Antisense
TACTGCGGATTTTCTACATGGTGGA 433 645 673 Antisense
GATAGGACACGTCACCTGCATAGAC 85 425 724 Antisense
GTATTTCAAACCCTTGTTCCATCAA 638 453 766 Antisense
GTACATCCCAACTGGTGTCATGTTC 586 459 798 Antisense
TCCCTTTTTCGACATCAACCTGAAT 370 585 828 Antisense
TCATTTCTCTATCCAGGTCTTGACC 41 621 880 Antisense
ATCATTCGCGAATTCAGGGTCACTA 287 31 922 Antisense
Sequence Source Affymetrix Proprietary Database