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[191428_s_at] beta adaptin-like protein

Description Y25C1A.5 /REP_DB=WormBase Gene ID /WP=CE21472 /TR=Q9TYL9 /GB=AAD12836.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=beta adaptin-like protein
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 41      6grp_total > 06      4grp_total > 57      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 791.1
(0.3)
P 		771.3
(-0.2)
P 		889.2
(3)
P 		671.2
(-3)
P 		218
B 744.5
(-1.9)
P 		794.1
(-0.9)
P 		989.8
(3)
P 		688.1
(-3)
P 		302
C 589.3
(-2.9)
P 		952.7
(3)
P 		919.5
(2.5)
P 		586
(-3)
P 		367
avr 708.3
(-1.7) 		839.4
(1) 		932.8
(3) 		648.4
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 910.6
(3)
P 		737.4
(-0)
P 		583
(-2.8)
P 		673.6
(-1.2)
P 		569.3
(-3)
P 		748
(0.1)
P 		341
B 923.6
(3)
P 		768.9
(0.3)
P 		764.6
(0.2)
P 		577.9
(-3)
P 		674.1
(-1.3)
P 		589.6
(-2.8)
P 		346
C 955.8
(3)
P 		806.8
(0.5)
P 		842.2
(1.1)
P 		597.6
(-3)
P 		776.7
(0)
P 		607.6
(-2.8)
P 		358
avr 930
(3) 		771
(-0) 		729.9
(-0.8) 		616.4
(-3) 		673.4
(-1.9) 		648.4
(-2.4) 		314
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 288.1
(3)
P 		167.4
(-0.8)
P 		232.5
(1.2)
P 		98.3
(-3)
P 		190
B 237.4
(3)
P 		196.1
(0.3)
P 		229.4
(2.5)
P 		146.6
(-3)
P 		91
C 195.1
(-0.4)
P 		273.9
(1.7)
P 		320.5
(3)
P 		98.8
(-3)
P 		222
avr 240.2
(2.2) 		212.5
(1) 		260.8
(3) 		114.6
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 167.9
(-1.2)
P 		262.3
(3)
P 		127
(-3)
P 		170.8
(-1.1)
P 		171.8
(-1)
P 		182.1
(-0.6)
P 		135
B 321.4
(3)
P 		255.9
(0.7)
P 		185.7
(-1.8)
P 		153.1
(-3)
P 		273.9
(1.3)
P 		219.9
(-0.6)
P 		168
C 354.3
(3)
P 		246.2
(0.2)
P 		214.4
(-0.6)
P 		120.2
(-3)
P 		251.3
(0.4)
P 		203.4
(-0.9)
P 		234
avr 281.2
(3) 		254.8
(1.8) 		175.7
(-1.8) 		148
(-3) 		232.3
(0.8) 		201.8
(-0.6) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191428_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5771
Sequence Type Exemplar sequence
Representative Public ID Y25C1A.5 NCBI
Target Description Y25C1A.5 /REP_DB=WormBase Gene ID /WP=CE21472 /TR=Q9TYL9 /GB=AAD12836.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=beta adaptin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062040 NCBI Caenorhabditis elegans Y25C1A.5 (Y25C1A.5) mRNA, complete cds. 11/11 None
SNAP00000041878 ENSEMBL cdna:SNAP chromosome:CEL140:II:3062269:3087385:1 11/11 None
GENEFINDER00000041897 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3078801:3087385:1 11/11 None
Y25C1A.5 ENSEMBL cdna:known chromosome:CEL140:II:3078791:3087669:1 gene:Y25C1A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3078799-3087384(+) 100.0 100.0
Public Domain and Genome References
Gene Title beta adaptin-like protein
Ensembl Y25C1A.5
Entrez Gene 173656 Entrez gene
SwissProt Q9TYL9 EMBL-EBI
WormBase CE21472 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19563_S_AT coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative at
ATH1-121501:253528_S_AT coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative at
CANINE:1604202_AT similar to coatomer protein complex, subunit beta cfa
CANINE_2:CFA.17817.1.S1_S_AT similar to coatomer protein complex, subunit beta cfa
CANINE_2:CFA.18869.1.S1_S_AT similar to coatomer protein complex, subunit beta cfa
CANINE_2:CFA.20218.1.S1_S_AT similar to coatomer protein complex, subunit beta cfa
CANINE_2:CFAAFFX.13389.1.S1_AT similar to coatomer protein complex, subunit beta cfa
DROSOPHILA_2:1626340_AT coatomer protein dm
DROSGENOME1:152234_AT coatomer protein dm
CHICKEN:GGAAFFX.12982.1.S1_AT coatomer protein complex, subunit beta gga
CHICKEN:GGAAFFX.12982.1.S1_S_AT coatomer protein complex, subunit beta gga
HG-U133A:201358_S_AT coatomer protein complex, subunit beta hs
HG-U133_PLUS_2:201358_S_AT coatomer protein complex, subunit beta hs
HG-FOCUS:201358_S_AT coatomer protein complex, subunit beta hs
HG-U133A_2:201358_S_AT coatomer protein complex, subunit beta hs
HG-U133_PLUS_2:201359_AT coatomer protein complex, subunit beta hs
HG-U133A:201359_AT coatomer protein complex, subunit beta hs
HG-U133A_2:201359_AT coatomer protein complex, subunit beta hs
HU35KSUBB:RC_AA063413_AT coatomer protein complex, subunit beta hs
HUGENEFL:X82103_AT coatomer protein complex, subunit beta hs
U133_X3P:G7705368_3P_X_AT coatomer protein complex, subunit beta hs
U133_X3P:G7705368_3P_A_AT coatomer protein complex, subunit beta hs
HG-U95AV2:34326_AT coatomer protein complex, subunit beta hs
HG-U133_PLUS_2:233308_AT Coatomer protein complex, subunit beta hs
HG-U133B:233308_AT Coatomer protein complex, subunit beta hs
HU35KSUBD:RC_AA453485_AT Coatomer protein complex, subunit beta hs
U133_X3P:HS.3059.1.S1_3P_AT Coatomer protein complex, subunit beta hs
HG-U95B:59403_AT Coatomer protein complex, subunit beta hs
HG-U95D:70852_AT Coatomer protein complex, subunit beta hs
HU35KSUBD:RC_H47836_AT Coatomer protein complex, subunit beta hs
MU11KSUBA:AA269805_S_AT coatomer protein complex, subunit beta 1 mm
MG-U74AV2:94992_AT coatomer protein complex, subunit beta 1 mm
MOE430A:1423301_AT coatomer protein complex, subunit beta 1 mm
MOUSE430A_2:1423301_AT coatomer protein complex, subunit beta 1 mm
MOUSE430_2:1423301_AT coatomer protein complex, subunit beta 1 mm
MG-U74CV2:134662_F_AT Coatomer protein complex, subunit beta 1, mRNA (cDNA clone MGC:31018 IMAGE:4022216) mm
MU19KSUBC:TC39783_AT Coatomer protein complex, subunit beta 1, mRNA (cDNA clone MGC:31018 IMAGE:4022216) mm
RG-U34A:RC_AI105054_AT coatomer protein complex, subunit beta 1 rn
RAE230A:1367461_AT coatomer protein complex, subunit beta 1 rn
RAE230B:1367461_AT coatomer protein complex, subunit beta 1 rn
RAT230_2:1367461_AT coatomer protein complex, subunit beta 1 rn
YEAST_2:1779426_AT Essential beta-coat protein of the COPI coatomer, involved in ER-to-Golgi protein trafficking and maintenance of normal ER morphology; shares 43% sequence identity with mammalian beta-coat protein (beta-COP) Sc
Protein Similarities
Method ID Description E-Value
blast NP_494441 Y25C1A.5 [Caenorhabditis elegans] gb|AAD12836.1| Hypothetical protein Y25C1A.5 [Caenorhabditis elegans] 0.0
blast CAE72462 Hypothetical protein CBG19635 [Caenorhabditis briggsae] 0.0
blast XP_870452 PREDICTED: similar to coatomer protein complex, subunit beta isoform 3 [Bos taurus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 4.1E-32
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 7.2E-102
Sequence
Target Sequence 
>C. ELEGANS:191428_S_AT
tgagctcgccactgttggagacttgaagcttgtcgataagccgacaccggttacacttgc
tcccaatgatttttcgaatattaaagcgacggtgaaggttgcgtcgacggagaatggtgt
gatcttttcaacgatttcgtatgatgtgacaggatctacgtcggatcggaattgtgtcta
tttgcaggatattaagattgatattatggattacatagtgcctggcaacgtgacagacac
agaattccgtacaatgtggagtgatttcgaatgggagaataaggtgaacgtgatgacgcc
gattcgtgatctacgggatttccttaatcatttgtcgacatctacgaatatgaaggtttt
gactggagatgcggcgattgaaggcgactgtggattcctggcagccaatctatgtgctca
ttcgattttcggtgaagatgctctcgcgaacgtctctgtcgagaaggctcttccgatgga
tgactcgtcgccgatcgtcggtcatattcggatccgtgcaaagagccaaggaatgtgcct
gacactgggtgataagctgagctcggcaatgcgttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCTCGCCACTGTTGGAGACTTG 141 569 2313 Antisense
TAAGCCGACACCGGTTACACTTGCT 674 637 2349 Antisense
ACACTTGCTCCCAATGATTTTTCGA 435 111 2365 Antisense
AGTGCCTGGCAACGTGACAGACACA 256 61 2529 Antisense
GACGCCGATTCGTGATCTACGGGAT 248 381 2607 Antisense
ATTTCCTTAATCATTTGTCGACATC 471 15 2630 Antisense
GCAGCCAATCTATGTGCTCATTCGA 457 313 2713 Antisense
GTCTCTGTCGAGAAGGCTCTTCCGA 132 469 2764 Antisense
TCGTCGGTCATATTCGGATCCGTGC 531 603 2807 Antisense
GGAATGTGCCTGACACTGGGTGATA 216 533 2842 Antisense
AAGCTGAGCTCGGCAATGCGTTCAC 702 149 2866 Antisense
Sequence Source Affymetrix Proprietary Database