[Home] | [Total List]

[191427_at] G-protein coupled receptor

Description R10D12.5 /REP_DB=WormBase Gene ID /WP=CE12680 /TR=Q9XVJ9 /GB=CAB03246.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 62      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 7.2
(-2.6)
A 		6.3
(-2.7)
A 		2.6
(-3)
A 		80
(3)
A 		77
B 10.7
(-3)
A 		13.2
(-2.7)
A 		46.1
(1.8)
A 		54.7
(3)
A 		44
C 17
(-1.8)
A 		6.6
(-2.7)
A 		3.4
(-3)
A 		73
(3)
A 		70
avr 11.6
(-2.7) 		8.7
(-3) 		17.4
(-2.1) 		69.2
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.5
(-3)
A 		4.5
(-2.2)
A 		8.5
(1)
A 		8.4
(0.9)
A 		11
(3)
A 		6.9
(-0.3)
A 		8
B 6.4
(-2.4)
A 		16.1
(-0.8)
A 		39.1
(3)
A 		9.9
(-1.9)
A 		27.5
(1.1)
A 		3
(-3)
A 		36
C 6.7
(-0.5)
A 		3.9
(-2.4)
A 		12.2
(3)
A 		11.2
(2.4)
A 		7.7
(0.1)
A 		2.9
(-3)
A 		9
avr 5.5
(-2.5) 		8.2
(-1.5) 		19.9
(3) 		9.8
(-0.9) 		15.4
(1.3) 		4.3
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.6
(-2)
A 		1.4
(-2.6)
A 		0.7
(-3)
A 		11.7
(3)
A 		11
B 3.4
(-2.9)
A 		3.3
(-3)
A 		10.7
(2.3)
A 		11.7
(3)
A 		8
C 5.6
(-0.6)
A 		1.9
(-2.6)
A 		1.2
(-3)
A 		12.3
(3)
A 		11
avr 3.9
(-1.9) 		2.2
(-3) 		4.2
(-1.8) 		11.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.6
(-0.8)
A 		1.9
(-0.1)
A 		2.1
(0.3)
A 		3.3
(3)
A 		1.7
(-0.6)
A 		3
B 2.2
(-2.3)
A 		5.4
(-0.4)
A 		9.5
(2)
A 		2.6
(-2.1)
A 		11.2
(3)
A 		1.1
(-3)
A 		10
C 2.5
(1.3)
A 		1.2
(-2.4)
A 		3.1
(3)
A 		2.3
(0.7)
A 		2.5
(1.3)
A 		1
(-3)
A 		2
avr 1.8
(-2.3) 		2.7
(-1.1) 		4.8
(1.8) 		2.3
(-1.6) 		5.7
(3) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12614
Sequence Type Exemplar sequence
Representative Public ID R10D12.5 NCBI
Target Description R10D12.5 /REP_DB=WormBase Gene ID /WP=CE12680 /TR=Q9XVJ9 /GB=CAB03246.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074059 NCBI Caenorhabditis elegans R10D12.5 (R10D12.5) mRNA, complete cds. 11/11 None
SNAP00000021050 ENSEMBL cdna:SNAP chromosome:CEL140:V:13949663:13951388:1 9/11 None
GENEFINDER00000021067 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13950378:13951388:1 9/11 None
R10D12.5 ENSEMBL cdna:known chromosome:CEL140:V:13949492:13951388:1 gene:R10D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13949491-13951388(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl R10D12.5
Entrez Gene 187762 Entrez gene
SwissProt Q9XVJ9 EMBL-EBI
WormBase CE12680 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03246 Hypothetical protein R10D12.5 [Caenorhabditis elegans] ref|NP_506460.1| R10D12.5 [Caenorhabditis elegans] 0.0
blast CAB03246 Hypothetical protein R10D12.5 [Caenorhabditis elegans] ref|NP_506460.1| R10D12.5 [Caenorhabditis elegans] 1.0E-86
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 2.0E-57
blast CAE66187 Hypothetical protein CBG11425 [Caenorhabditis briggsae] 3.0E-50
blast CAB03246 Hypothetical protein R10D12.5 [Caenorhabditis elegans] ref|NP_506460.1| R10D12.5 [Caenorhabditis elegans] 3.0E-49
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 2.0E-46
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 5.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506460.1 1 25-47
R10D12.5 1 25-47
Sequence
Target Sequence 
>C. ELEGANS:191427_AT
cctgcatcacccatcaaatgtcagttgttcaatgtgaatagagtgtttgttgtagagaaa
cttcaagcatcggatgatcagtttgtggcgtttaagactgttaaaagtgaagtaactggt
acttgtgaagatggcaggacaagttttactcggccaactacaaattggtgtataaaagta
tttgttgatccaaatgcattgtacactgcatctaatgcaatatcatcttgttccaatcca
cagcagtttctgccttgggtccaggctattctcaatttgcggctctctgggtggatggga
ctcggaaagatcaatgtgttgcggatggatgggaaagtaatccagattgtactgcaattt
tcatatactgatatgtacctaacaaactacgctggatacttatgggatcccaatcagcct
gacaaacaggcggccggtccgtggcagaattgtattcaaatgtggattcgcatcgaatcg
gctgaccccaactttccttatgccacatatcaaaatggaaatgttgacgatgcaatatgt
gacggaacaaactcatctgcttatgctctacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGCATCACCCATCAAATGTCAGT 1 267 352 Antisense
GCAGGACAAGTTTTACTCGGCCAAC 332 309 485 Antisense
TCATCTTGTTCCAATCCACAGCAGT 451 621 574 Antisense
CCACAGCAGTTTCTGCCTTGGGTCC 25 273 589 Antisense
CAGGCTATTCTCAATTTGCGGCTCT 539 209 613 Antisense
CTCTCTGGGTGGATGGGACTCGGAA 273 231 634 Antisense
CAAACTACGCTGGATACTTATGGGA 667 191 734 Antisense
TTATGGGATCCCAATCAGCCTGACA 116 681 751 Antisense
GCCTGACAAACAGGCGGCCGGTCCG 453 269 768 Antisense
CCAACTTTCCTTATGCCACATATCA 76 277 839 Antisense
AAACTCATCTGCTTATGCTCTACGT 51 127 900 Antisense
Sequence Source Affymetrix Proprietary Database