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[191426_at] 7TM chemoreceptor, str family

Description F59B1.1 /REP_DB=WormBase Gene ID /WP=CE17942 /GEN=str-114 /TR=O61883 /GB=AAC17667.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 01      6grp_cgc > 42      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 25.9
(-3)
A 		26.4
(-3)
A 		79.1
(-0.6)
A 		161.6
(3)
P 		136
B 53.9
(-1.3)
A 		19.5
(-3)
A 		35.6
(-2.2)
A 		140.9
(3)
P 		121
C 47.7
(-2.4)
A 		60.1
(-1.9)
A 		32.4
(-3)
A 		190.6
(3)
P 		158
avr 42.5
(-2.7) 		35.3
(-3) 		49
(-2.4) 		164.4
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 71.5
(3)
A 		40.7
(0.2)
A 		40.9
(0.2)
A 		25.2
(-1.2)
A 		40.6
(0.2)
A 		5.5
(-3)
A 		66
B 34.5
(-0.7)
A 		63
(3)
P 		46.7
(0.9)
A 		34.1
(-0.8)
A 		45.1
(0.7)
A 		16.8
(-3)
A 		46
C 39.7
(-0.6)
A 		70.4
(3)
A 		65.4
(2.4)
A 		19.2
(-3)
A 		37.3
(-0.9)
A 		36.1
(-1)
A 		51
avr 48.6
(1.5) 		58
(3) 		51
(1.9) 		26.2
(-2) 		41
(0.4) 		19.5
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 9.4
(-1.8)
A 		5.7
(-3)
A 		20.7
(2)
A 		23.7
(3)
P 		18
B 17.2
(-0)
A 		4.8
(-3)
A 		8.3
(-2.2)
A 		30
(3)
P 		25
C 15.8
(-1.7)
A 		17.3
(-1.3)
A 		11.3
(-3)
A 		32.1
(3)
P 		21
avr 14.1
(-1.5) 		9.3
(-3) 		13.4
(-1.7) 		28.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.2
(2.4)
A 		14.5
(3)
A 		8.9
(0.5)
A 		6.4
(-0.7)
A 		12.2
(2)
A 		1.3
(-3)
A 		13
B 12
(-0.6)
A 		21
(3)
P 		11.3
(-0.9)
A 		9
(-1.9)
A 		18.3
(1.9)
A 		6.2
(-3)
A 		15
C 14.7
(0.7)
A 		21.5
(3)
A 		16.6
(1.3)
A 		3.9
(-3)
A 		12.1
(-0.2)
A 		12.1
(-0.2)
A 		18
avr 13.3
(0.3) 		19
(3) 		12.3
(-0.2) 		6.4
(-3) 		14.2
(0.7) 		6.5
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15707
Sequence Type Exemplar sequence
Representative Public ID F59B1.1 NCBI
Target Description F59B1.1 /REP_DB=WormBase Gene ID /WP=CE17942 /GEN=str-114 /TR=O61883 /GB=AAC17667.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071622 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-114) (str-114) mRNA, complete cds. 11/11 None
GENEFINDER00000030028 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3649588:3651272:1 11/11 None
F59B1.1 ENSEMBL cdna:known chromosome:CEL140:V:3649588:3651272:1 gene:F59B1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030018 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3649587-3651272(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-114
Ensembl F59B1.1
Entrez Gene 191999 Entrez gene
SwissProt O61883 EMBL-EBI
WormBase CE17942 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17667 Seven tm receptor protein 114 [Caenorhabditis elegans] ref|NP_504023.1| Seven TM Receptor family member (str-114) [Caenorhabditis elegans] 0.0
blast CAE61182 Hypothetical protein CBG04953 [Caenorhabditis briggsae] 1.0E-113
blast NP_504025 Seven TM Receptor family member (str-113) [Caenorhabditis elegans] gb|AAD14741.1| Seven tm receptor protein 113 [Caenorhabditis elegans] 1.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.8E-18
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504023.1 7 15-34,41-60,92-114,133-155,202-224,245-267,282-304
F59B1.1 7 15-34,41-60,92-114,133-155,202-224,245-267,282-304
GENEFINDER00000030028 7 15-34,41-60,92-114,133-155,202-224,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:191426_AT
gtcggacatgtaccgtatgctttttacaaaactcaaggaaatacacgagtaattcgatgg
gataacatgattggagtaattcatcatatgatagttatgacaatctctataagtgccgtt
ttctactttggcattaaaacctacactcgaataatgagtttcaagggaaaatcccagaaa
accaaggatctccagaatcaatttttcactgctctagttgctcaaaccgtagtccctctg
attttcatgtttatcccaaatatggtgctcactacggcagcccttatagatggcacattt
ggctcatgggccaatattactgtagttatgaatcatttgtatccggctgccgatccattc
gttatactgttcattattaaggggttccggaatagtattagaaatgttatatatcgctgc
acaaaaacgaaaaaagcatcggttagctcagtggtccgtggtattgaggctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGACATGTACCGTATGCTTTTT 101 473 550 Antisense
GACAATCTCTATAAGTGCCGTTTTC 616 363 648 Antisense
CAATTTTTCACTGCTCTAGTTGCTC 317 181 748 Antisense
TCTAGTTGCTCAAACCGTAGTCCCT 569 609 762 Antisense
GTAGTCCCTCTGATTTTCATGTTTA 175 457 778 Antisense
TGCTCACTACGGCAGCCCTTATAGA 194 579 815 Antisense
TAGATGGCACATTTGGCTCATGGGC 368 637 836 Antisense
TTTGTATCCGGCTGCCGATCCATTC 20 667 885 Antisense
CGATCCATTCGTTATACTGTTCATT 513 249 900 Antisense
GCATCGGTTAGCTCAGTGGTCCGTG 706 307 985 Antisense
GTGGTCCGTGGTATTGAGGCTCAAA 173 489 1000 Antisense
Sequence Source Affymetrix Proprietary Database