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[191423_s_at] glutathione S-transferase

Description R11A8.5 /REP_DB=WormBase Gene ID /WP=CE06303 /TR=Q21925 /GB=CAA94368.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 41      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 43      6grp_total > 30      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 974
1 2 3 4 range
A 1335.8
(3)
P 		1278.5
(2.6)
P 		1142.6
(1.6)
P 		534.3
(-3)
P 		802
B 1508.4
(3)
P 		1065.9
(0.2)
P 		1079.8
(0.3)
P 		566.3
(-3)
P 		942
C 1345.4
(3)
P 		985
(0.3)
P 		1257.7
(2.3)
P 		557.8
(-3)
P 		788
avr 1396.5
(3) 		1109.8
(1) 		1160
(1.3) 		552.8
(-3) 		844

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 769
1 2 3 4 5 6 range
A 1037.8
(-0.7)
P 		1194.3
(0.7)
P 		1460
(3)
P 		1308.1
(1.7)
P 		870
(-2.2)
P 		774.7
(-3)
P 		685
B 938.1
(-3)
P 		1366.8
(1.5)
P 		1506.6
(3)
P 		1129.8
(-1)
P 		1060.6
(-1.7)
P 		971.2
(-2.7)
P 		569
C 983.3
(-0.3)
P 		1173
(1.8)
P 		1113.5
(1.1)
P 		1286.1
(3)
P 		737.3
(-3)
P 		933.4
(-0.9)
P 		549
avr 986.4
(-1.8) 		1244.7
(1.5) 		1360
(3) 		1241.3
(1.5) 		889.3
(-3) 		893.1
(-3) 		471
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 486.4
(3)
P 		277.5
(-0.1)
P 		298.7
(0.2)
P 		78.2
(-3)
P 		408
B 481
(3)
P 		263.2
(-0.6)
P 		250.2
(-0.8)
P 		120.7
(-3)
P 		360
C 445.4
(3)
P 		283.2
(0.2)
P 		438.4
(2.9)
P 		94.1
(-3)
P 		351
avr 470.9
(3) 		274.6
(-0.2) 		329.1
(0.7) 		97.7
(-3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 191.3
(-2.9)
P 		424.8
(3)
P 		318
(0.3)
P 		331.8
(0.6)
P 		262.5
(-1.1)
P 		188.6
(-3)
P 		236
B 326.4
(-2)
P 		455
(3)
P 		365.9
(-0.4)
P 		299.3
(-3)
P 		430.9
(2.1)
P 		362.2
(-0.6)
P 		156
C 364.5
(3)
P 		357.9
(2.7)
P 		283.4
(-0.9)
P 		258.6
(-2)
P 		238.6
(-3)
P 		312.5
(0.5)
P 		126
avr 294.1
(-2.7) 		412.6
(3) 		322.4
(-1.3) 		296.6
(-2.6) 		310.7
(-1.9) 		287.8
(-3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191423_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8719
Sequence Type Exemplar sequence
Representative Public ID R11A8.5 NCBI
Target Description R11A8.5 /REP_DB=WormBase Gene ID /WP=CE06303 /TR=Q21925 /GB=CAA94368.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069512 NCBI Caenorhabditis elegans R11A8.5 (R11A8.5) mRNA, complete cds. 11/11 None
SNAP00000003245 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10366484:10367762:-1 11/11 None
GENEFINDER00000003250 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10366484:10367762:-1 11/11 None
R11A8.5 ENSEMBL cdna:known chromosome:CEL140:IV:10366370:10367762:-1 gene:R11A8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10366489-10367768(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Ensembl R11A8.5
Entrez Gene 177925 Entrez gene
SwissProt Q21925 EMBL-EBI
WormBase CE06303 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249233_AT expressed protein at
CANINE:1596128_AT similar to prostaglandin E synthase 2 isoform 1 cfa
CANINE_2:CFA.12740.1.S1_AT similar to prostaglandin E synthase 2 isoform 1 cfa
CANINE_2:CFA.12740.1.S1_S_AT similar to prostaglandin E synthase 2 isoform 1 cfa
CANINE_2:CFAAFFX.30749.1.S1_AT similar to prostaglandin E synthase 2 isoform 1 cfa
DROSOPHILA_2:1635950_AT Suppressor of ref(2)P sterility dm
DROSGENOME1:143473_AT Suppressor of ref(2)P sterility dm
CHICKEN:GGA.2926.1.S1_AT similar to prostaglandin E synthase 2 isoform 1; membrane-associated prostaglandin E synthase 2; chromosome 9 open reading frame 15; gamma-interferon-activated transcriptional element-binding factor 1; GATE-binding factor 1 gga
HU35KSUBC:RC_N89670_AT prostaglandin E synthase 2 hs
HG-U133A:218083_AT prostaglandin E synthase 2 hs
HG-U133_PLUS_2:218083_AT prostaglandin E synthase 2 hs
HG-U133A_2:218083_AT prostaglandin E synthase 2 hs
U133_X3P:G13376616_3P_X_AT prostaglandin E synthase 2 hs
U133_X3P:G13376616_3P_AT prostaglandin E synthase 2 hs
U133_X3P:218083_3P_AT prostaglandin E synthase 2 hs
HG-U95B:52037_AT prostaglandin E synthase 2 hs
MU11KSUBA:AA288759_AT prostaglandin E synthase 2 mm
MG-U74AV2:160765_AT prostaglandin E synthase 2 mm
MOE430A:1417591_AT prostaglandin E synthase 2 mm
MOUSE430A_2:1417591_AT prostaglandin E synthase 2 mm
MOUSE430_2:1417591_AT prostaglandin E synthase 2 mm
RAE230A:1374532_AT prostaglandin E synthase 2 (predicted) rn
RAT230_2:1374532_AT prostaglandin E synthase 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94368 Hypothetical protein R11A8.5 [Caenorhabditis elegans] ref|NP_501913.1| R11A8.5 [Caenorhabditis elegans] 0.0
blast CAE56142 Hypothetical protein CBG23755 [Caenorhabditis briggsae] 1.0E-176
blast CAG09647 unnamed protein product [Tetraodon nigroviridis] 9.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 4.4E-6
Sequence
Target Sequence 
>C. ELEGANS:191423_S_AT
cccgatcagtcactcgaccagataatacaaatgtatccagcagttgattcaacaaacgag
aaaggaaagccagttctcaactaccctaacaaattcttcgttatgaagggaaaagtagac
ggggacgcaaatatggcttctgccagagaagagcgggaatggagagaatgggtggacaat
tggttcatccatcttatttctcctaatgtatatcgtaattggaatgagtctgtcgagaca
ttccgttggttcgaacaagttggcgactggcatcgtacttttccagcctgggagagagtt
ctagcggtatacgtgggtgcagcagcaatgtttttactttcaaaaacattgaagaaaaag
cacaacatcaatgatgaacgagaagaattgagaaaggcttgtcgtgactggatggcagca
attggaccaaatagacagtttttaggaggagatgaaccgaatctagctgatctgtcatta
tatggagctatgaattctttctatggatgctcagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGATCAGTCACTCGACCAGATAA 82 261 430 Antisense
CTCAACTACCCTAACAAATTCTTCG 432 209 505 Antisense
GGGACGCAAATATGGCTTCTGCCAG 339 495 551 Antisense
TTCATCCATCTTATTTCTCCTAATG 682 687 613 Antisense
TCTGTCGAGACATTCCGTTGGTTCG 243 607 658 Antisense
GCGACTGGCATCGTACTTTTCCAGC 607 289 692 Antisense
AGCGGTATACGTGGGTGCAGCAGCA 129 81 732 Antisense
GCAGCAGCAATGTTTTTACTTTCAA 701 311 748 Antisense
GGCTTGTCGTGACTGGATGGCAGCA 3 537 825 Antisense
GAACCGAATCTAGCTGATCTGTCAT 554 345 883 Antisense
GAATTCTTTCTATGGATGCTCAGCG 242 325 921 Antisense
Sequence Source Affymetrix Proprietary Database