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[191421_at] 7TM chemoreceptor, str family

Description C54F6.10 /REP_DB=WormBase Gene ID /WP=CE24865 /GEN=str-31 /TR=Q9GUE5 /GB=AAG24019.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_high1_10_10 > 20      4grp_high_8_8 > 21      6grp_total > 70      4grp_total > 18      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 52.6
(-3)
A 		60.3
(-2.7)
P 		54.6
(-2.9)
A 		223.6
(3)
P 		171
B 63.5
(-3)
A 		127.1
(3)
P 		66.9
(-2.7)
P 		120.8
(2.4)
P 		64
C 54.3
(-3)
P 		99.6
(1.1)
P 		64.3
(-2.1)
P 		121.4
(3)
P 		67
avr 56.8
(-3) 		95.7
(-0.6) 		61.9
(-2.7) 		155.3
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 120.5
(3)
P 		52.6
(-3)
A 		92.2
(0.5)
P 		99.7
(1.2)
P 		96.4
(0.9)
P 		78.9
(-0.7)
P 		68
B 88.8
(-0.8)
P 		72.2
(-3)
A 		118.5
(3)
P 		100.8
(0.7)
P 		77.2
(-2.4)
P 		91.6
(-0.5)
P 		46
C 70.7
(-3)
M 		87.9
(-0.5)
P 		74.2
(-2.5)
A 		111.4
(3)
M 		75
(-2.4)
P 		101.3
(1.5)
M 		41
avr 93.3
(1.1) 		70.9
(-3) 		95
(1.4) 		104
(3) 		82.9
(-0.8) 		90.6
(0.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 19.1
(-1.2)
A 		13.1
(-3)
P 		14.3
(-2.6)
A 		32.7
(3)
P 		20
B 20.3
(-1.2)
A 		31.4
(3)
P 		15.5
(-3)
P 		25.7
(0.8)
P 		16
C 18
(-3)
P 		28.6
(3)
P 		22.4
(-0.5)
P 		20.5
(-1.6)
P 		11
avr 19.1
(-1.9) 		24.4
(1.7) 		17.4
(-3) 		26.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 22.2
(-1)
P 		18.7
(-3)
A 		20.1
(-2.2)
P 		25.3
(0.8)
P 		29.1
(3)
P 		19.2
(-2.7)
P 		10
B 30.9
(1.1)
P 		24
(-3)
A 		28.8
(-0.2)
P 		26.7
(-1.4)
P 		31.4
(1.4)
P 		34.2
(3)
P 		10
C 26.2
(-0.1)
M 		26.8
(0.2)
P 		18.9
(-3)
A 		22.4
(-1.6)
M 		24.3
(-0.8)
P 		33.9
(3)
M 		15
avr 26.4
(0.5) 		23.2
(-2.4) 		22.6
(-3) 		24.8
(-1) 		28.3
(2.3) 		29.1
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11886
Sequence Type Exemplar sequence
Representative Public ID C54F6.10 NCBI
Target Description C54F6.10 /REP_DB=WormBase Gene ID /WP=CE24865 /GEN=str-31 /TR=Q9GUE5 /GB=AAG24019.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072531 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-31) (str-31) mRNA, complete cds. 11/11 None
SNAP00000031615 ENSEMBL cdna:SNAP chromosome:CEL140:V:7509629:7510674:-1 9/11 None
GENEFINDER00000031631 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7509506:7510497:-1 11/11 None
C54F6.10 ENSEMBL cdna:known chromosome:CEL140:V:7509506:7510857:-1 gene:C54F6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7509506-7510858(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-31
Ensembl C54F6.10
Entrez Gene 179136 Entrez gene
SwissProt Q9GUE5 EMBL-EBI
WormBase CE24865 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504932 Seven TM Receptor family member (str-31) [Caenorhabditis elegans] gb|AAG24019.1| Seven tm receptor protein 31 [Caenorhabditis elegans] 1.0E-178
blast T31858 hypothetical protein C54F6.10 - Caenorhabditis elegans 1.0E-159
blast NP_504932 Seven TM Receptor family member (str-31) [Caenorhabditis elegans] gb|AAG24019.1| Seven tm receptor protein 31 [Caenorhabditis elegans] 1.0E-138
blast T31858 hypothetical protein C54F6.10 - Caenorhabditis elegans 1.0E-138
blast CAE62316 Hypothetical protein CBG06382 [Caenorhabditis briggsae] 1.0E-123
blast NP_504932 Seven TM Receptor family member (str-31) [Caenorhabditis elegans] gb|AAG24019.1| Seven tm receptor protein 31 [Caenorhabditis elegans] 1.0E-118
blast CAE62316 Hypothetical protein CBG06382 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504932.1 7 15-34,46-68,93-115,136-158,200-222,250-272,282-304
C54F6.10 7 15-34,46-68,93-115,136-158,200-222,250-272,282-304
SNAP00000031615 5 32-54,75-97,139-161,189-211,221-243
GENEFINDER00000031631 4 16-38,80-102,130-152,162-184
Sequence
Target Sequence 
>C. ELEGANS:191421_AT
aattctgatcagttggtccgttgtttttggtgtgttcggtggaggaactgttctatattg
tggttggattgatgattattcacatgattacatgagagatgttatgctaaaagagtataa
tttagatgttgatcatgtctccgggtacactgttattgcatatgaccaaaatgggaatct
ccggtggaagagtttagcagtcacactttgcctaatgttcgtcatgggaacacaatttct
tattgttggaatatgcggcttccgtatgcattttaaaatgaacgagctgctgaaaaactt
gtcagaagctcatcgaaaacttcagaaacagtttttcatgagcttagtgttacagataac
ttcaccaacattaactttctacatcccagctgttctcatccttactgttccgtttctgaa
cctcgaatggagttttccaacgggagttatagtgtgctcattttccatctatccaccgat
tgatagcctcattctaatgctaattgttcctgaatatagaaatgcgatcaaagcaatatt
caaacgaccatccacgattctgaaccccaaaactaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTGATCAGTTGGTCCGTTGTT 489 177 417 Antisense
GTTGTTTTTGGTGTGTTCGGTGGAG 57 433 436 Antisense
ATCATGTCTCCGGGTACACTGTTAT 578 29 548 Antisense
GTCACACTTTGCCTAATGTTCGTCA 136 465 616 Antisense
GCGGCTTCCGTATGCATTTTAAAAT 630 289 671 Antisense
AACATTAACTTTCTACATCCCAGCT 604 135 783 Antisense
TACTGTTCCGTTTCTGAACCTCGAA 138 645 819 Antisense
GTTATAGTGTGCTCATTTTCCATCT 328 447 862 Antisense
TCCACCGATTGATAGCCTCATTCTA 556 589 888 Antisense
TTCAAACGACCATCCACGATTCTGA 5 687 955 Antisense
CACGATTCTGAACCCCAAAACTACA 411 199 969 Antisense
Sequence Source Affymetrix Proprietary Database