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[191420_at] 7TM chemoreceptor, srh family

Description F14F9.7 /REP_DB=WormBase Gene ID /WP=CE24901 /GEN=srh-129 /TR=Q9GUC6 /GB=AAF98621.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 20      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 70.5
(-0.6)
A 		61.5
(-1.2)
P 		33.5
(-3)
A 		126
(3)
P 		93
B 105
(3)
P 		68.8
(-0.4)
A 		40.9
(-3)
A 		92.2
(1.8)
P 		64
C 49.3
(-1.6)
P 		49.3
(-1.6)
A 		33
(-3)
A 		103.6
(3)
P 		71
avr 74.9
(0.3) 		59.9
(-1) 		35.8
(-3) 		107.3
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 19
(-2.6)
A 		67.6
(1.6)
P 		19.6
(-2.5)
A 		14.1
(-3)
A 		83.3
(3)
P 		26.2
(-2)
A 		69
B 54.3
(3)
M 		48.5
(2.2)
P 		49.5
(2.3)
P 		50
(2.4)
A 		42.3
(1.3)
A 		11.4
(-3)
A 		43
C 30.4
(-2.4)
A 		72.8
(3)
P 		26.1
(-3)
A 		47.7
(-0.2)
A 		45.6
(-0.5)
A 		38
(-1.5)
A 		47
avr 34.6
(-1.5) 		63
(3) 		31.7
(-2) 		37.3
(-1.1) 		57.1
(2.1) 		25.2
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 25.7
(3)
A 		13.4
(-1.3)
P 		8.7
(-3)
A 		18.4
(0.4)
P 		17
B 33.5
(3)
P 		17
(-1.1)
A 		9.5
(-3)
A 		19.7
(-0.5)
P 		24
C 16.3
(1.8)
P 		14.2
(-0.3)
A 		11.5
(-3)
A 		17.5
(3)
P 		6
avr 25.2
(3) 		14.9
(-1) 		9.9
(-3) 		18.5
(0.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.5
(-3)
A 		24
(2.7)
P 		4.3
(-2.8)
A 		3.6
(-3)
A 		25.1
(3)
P 		6.4
(-2.2)
A 		22
B 18.9
(3)
M 		16.1
(1.9)
P 		12
(0.2)
P 		13.2
(0.7)
A 		17.2
(2.3)
A 		4.2
(-3)
A 		15
C 11.3
(-1.2)
A 		22.2
(3)
P 		6.7
(-3)
A 		9.6
(-1.9)
A 		14.8
(0.1)
A 		12.7
(-0.7)
A 		16
avr 11.2
(-1.4) 		20.8
(3) 		7.7
(-3) 		8.8
(-2.5) 		19
(2.2) 		7.8
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15276
Sequence Type Exemplar sequence
Representative Public ID F14F9.7 NCBI
Target Description F14F9.7 /REP_DB=WormBase Gene ID /WP=CE24901 /GEN=srh-129 /TR=Q9GUC6 /GB=AAF98621.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071975(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071975 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-129) (srh-129) mRNA, complete cds. 11/11 None
SNAP00000039409 ENSEMBL cdna:SNAP chromosome:CEL140:V:5142113:5142709:-1 10/11 None
F14F9.7 ENSEMBL cdna:known chromosome:CEL140:V:5142113:5143611:-1 gene:F14F9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5142112-5143611(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-129
Ensembl F14F9.7
Entrez Gene 191883 Entrez gene
SwissProt Q9GUC6 EMBL-EBI
WormBase CE24901 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504376 Serpentine Receptor, class H family member (srh-129) [Caenorhabditis elegans] gb|AAF98621.1| Serpentine receptor, class h protein 129 [Caenorhabditis elegans] 0.0
blast CAE64081 Hypothetical protein CBG08685 [Caenorhabditis briggsae] 1.0E-130
blast AAK71875 Serpentine receptor, class h protein 128 [Caenorhabditis elegans] ref|NP_494338.1| Serpentine Receptor, class H family member (srh-128) [Caenorhabditis elegans] 1.0E-118
blast NP_504376 Serpentine Receptor, class H family member (srh-129) [Caenorhabditis elegans] gb|AAF98621.1| Serpentine receptor, class h protein 129 [Caenorhabditis elegans] 1.0E-100
blast CAE64081 Hypothetical protein CBG08685 [Caenorhabditis briggsae] 2.0E-68
blast AAK71875 Serpentine receptor, class h protein 128 [Caenorhabditis elegans] ref|NP_494338.1| Serpentine Receptor, class H family member (srh-128) [Caenorhabditis elegans] 6.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.2E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504376.1 7 15-37,57-79,94-116,136-158,196-218,242-264,279-298
F14F9.7 7 15-37,57-79,94-116,136-158,196-218,242-264,279-298
SNAP00000039409 3 44-66,90-112,127-146
Sequence
Target Sequence 
>C. ELEGANS:191420_AT
atgactttttgctttatgatcccgatatacatcaaactcccgggtagacaggagagtgag
aattataccattttgactcttccctgcattcctgaaaatatctataaaaacgaaaagttt
ttcttaacatctaccagtgttccatttatctattcaatggttggtggtttaactgtattg
ataactttccaaattttattctacgtgatatattctgtaatcgaactccgaaagcgtatc
aagaaactctcccgagttacatcatgtctacagcggaaattctcaaatgctctctacgca
caagtctcgattccaatgatcgtttacctttttcccatgttctatgtgtttttcacatgg
acatttgatgttttcagccagatttgcaacaatctcgtgtttattttcattgcgcttcac
gggcttttgtcaacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTTTTTGCTTTATGATCCCGA 245 45 454 Antisense
GATCCCGATATACATCAAACTCCCG 526 413 471 Antisense
AATTATACCATTTTGACTCTTCCCT 163 175 514 Antisense
CTCTTCCCTGCATTCCTGAAAATAT 24 231 530 Antisense
CATCTACCAGTGTTCCATTTATCTA 319 213 581 Antisense
AAGCGTATCAAGAAACTCTCCCGAG 84 151 685 Antisense
CTCTCCCGAGTTACATCATGTCTAC 590 231 700 Antisense
TCTACGCACAAGTCTCGATTCCAAT 161 615 746 Antisense
TACCTTTTTCCCATGTTCTATGTGT 598 647 778 Antisense
TGTTTATTTTCATTGCGCTTCACGG 272 561 851 Antisense
GCTTCACGGGCTTTTGTCAACAATT 324 305 867 Antisense
Sequence Source Affymetrix Proprietary Database