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[191417_at] 7TM chemoreceptor, srj family

Description C05E4.11 /REP_DB=WormBase Gene ID /WP=CE07944 /GEN=srj-24 /TR=O17355 /GB=AAB71281.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 27      4grp_total > 44      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 5
(-1.4)
A 		9.7
(3)
A 		3.3
(-3)
A 		3.7
(-2.6)
A 		6
B 24.9
(3)
A 		20.4
(1.8)
A 		2.2
(-3)
A 		2.3
(-3)
A 		23
C 3.2
(-3)
A 		7.4
(3)
A 		4.9
(-0.6)
A 		4.8
(-0.7)
A 		4
avr 11
(2) 		12.5
(3) 		3.5
(-3) 		3.6
(-2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.6
(3)
A 		2.5
(-1.7)
A 		2.3
(-2.1)
A 		2
(-2.8)
A 		1.9
(-3)
A 		2.4
(-1.9)
A 		3
B 4.3
(-0.3)
A 		3.5
(-2.7)
A 		3.4
(-3)
A 		5.4
(3)
A 		4.4
(0)
A 		4.1
(-0.9)
A 		2
C 38.5
(3)
A 		30.7
(1.7)
A 		2.3
(-3)
A 		4.8
(-2.6)
A 		4.9
(-2.6)
A 		17.3
(-0.5)
A 		36
avr 15.8
(3) 		12.2
(1.4) 		2.7
(-3) 		4.1
(-2.4) 		3.7
(-2.5) 		7.9
(-0.6) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.8
(1.9)
A 		2.1
(3)
A 		0.9
(-1.5)
A 		0.5
(-3)
A 		2
B 7.9
(3)
A 		5
(0.6)
A 		0.5
(-3)
A 		0.5
(-3)
A 		7
C 1.1
(-1.6)
A 		2.1
(3)
A 		1.7
(1.2)
A 		0.8
(-3)
A 		1
avr 3.6
(3) 		3.1
(2) 		1
(-2.2) 		0.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.8
(1.5)
A 		0.9
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-1.5)
A 		0.6
(-1.5)
A 		0
B 1.5
(1.2)
A 		1.2
(-0.6)
A 		0.8
(-3)
A 		1.4
(0.6)
A 		1.8
(3)
A 		1.5
(1.2)
A 		1
C 14.3
(3)
A 		9.4
(0.9)
A 		0.6
(-3)
A 		1
(-2.8)
A 		1.6
(-2.6)
A 		5.8
(-0.7)
A 		14
avr 5.5
(3) 		3.8
(0.9) 		0.6
(-3) 		1
(-2.5) 		1.3
(-2.1) 		2.6
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15907
Sequence Type Exemplar sequence
Representative Public ID C05E4.11 NCBI
Target Description C05E4.11 /REP_DB=WormBase Gene ID /WP=CE07944 /GEN=srj-24 /TR=O17355 /GB=AAB71281.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070908 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-24) (srj-24) mRNA, complete cds. 11/11 A 
SNAP00000009757 ENSEMBL cdna:SNAP chromosome:CEL140:V:736774:738700:-1 9/11 None
GENEFINDER00000009770 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:736774:738700:-1 11/11 None
C05E4.11 ENSEMBL cdna:known chromosome:CEL140:V:736774:738700:-1 gene:C05E4.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:736773-738700(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-24
Ensembl C05E4.11
Entrez Gene 191942 Entrez gene
SwissProt O17355 EMBL-EBI
WormBase CE07944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71281 Serpentine receptor, class j protein 24 [Caenorhabditis elegans] ref|NP_503309.1| Serpentine Receptor, class J family member (srj-24) [Caenorhabditis elegans] 0.0
blast AAB71279 Serpentine receptor, class j protein 25 [Caenorhabditis elegans] ref|NP_503308.1| Serpentine Receptor, class J family member (srj-25) [Caenorhabditis elegans] 1.0E-171
blast NP_001024073 Serpentine Receptor, class J family member (srj-23) [Caenorhabditis elegans] gb|AAX22285.1| Serpentine receptor, class j protein 23, isoform b [Caenorhabditis elegans] 1.0E-132
blast AAB71281 Serpentine receptor, class j protein 24 [Caenorhabditis elegans] ref|NP_503309.1| Serpentine Receptor, class J family member (srj-24) [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.3E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503309.1 7 13-30,43-65,91-113,126-148,201-223,244-266,281-303
C05E4.11 7 13-30,43-65,91-113,126-148,201-223,244-266,281-303
SNAP00000009757 5 13-30,42-64,116-138,159-181,196-218
GENEFINDER00000009770 7 13-30,43-65,91-113,126-148,201-223,244-266,281-303
Sequence
Target Sequence 
>C. ELEGANS:191417_AT
tatactgtttatttcatttcatgttttggacatttacatgctattactttattggagcgg
acttggagcggaaaatttacatgcgggatcctataatggagatttatgatgtggactcta
caaaaatcaatatgattatcgcactctatgagggaggaagtgaaattgtaataagaaaat
cgataattggaatcatcgccaacacaattttatcggtggcatctgtgctgatctatacga
ttattggatttttaatcattcgtaaattacgaagcaacacgcttctaatgagcaagaaga
caaaaaggctgcaagatcaactcatgagagccttaattgtgcagtccgtaatcccgtcat
ttgtcagttttgctccaactatggcgtcctggtatgagctaatcattggctttcatctag
ggagagcagtttactacacttcctcagttctagtctctacattcccatttttcgacccaa
ccgccataattgtcttcataccatcgtttcgagcaaagtgcgaaaaattcggaatgaatc
tgttaacgttggggaaagctgggcaacgttcagatggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACTGTTTATTTCATTTCATGTT 298 661 422 Antisense
GACATTTACATGCTATTACTTTATT 51 371 450 Antisense
TATTGGAGCGGACTTGGAGCGGAAA 556 665 471 Antisense
GAAAATTTACATGCGGGATCCTATA 383 353 492 Antisense
GGAGATTTATGATGTGGACTCTACA 425 517 519 Antisense
ATATGATTATCGCACTCTATGAGGG 489 21 551 Antisense
GAATCATCGCCAACACAATTTTATC 699 327 611 Antisense
AACCGCCATAATTGTCTTCATACCA 160 147 900 Antisense
TGTCTTCATACCATCGTTTCGAGCA 134 559 912 Antisense
GAATCTGTTAACGTTGGGGAAAGCT 428 175 957 Antisense
GAAAGCTGGGCAACGTTCAGATGGG 81 359 975 Antisense
Sequence Source Affymetrix Proprietary Database