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[191416_at] 7TM chemoreceptor, str family

Description T18H9.4 /REP_DB=WormBase Gene ID /WP=CE25114 /GEN=str-177 /TR=Q22547 /GB=AAA83330.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 30      4grp_total > 10      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 5
(-2.8)
A 		4.4
(-2.9)
A 		2.4
(-3)
A 		98.4
(3)
A 		96
B 2.2
(-3)
A 		5.8
(-2.8)
A 		3.4
(-2.9)
A 		104.1
(3)
M 		102
C 4.5
(-3)
A 		18.4
(-2.4)
A 		3.7
(-3)
A 		159.6
(3)
A 		156
avr 3.9
(-3) 		9.5
(-2.7) 		3.2
(-3) 		120.7
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 53
(3)
A 		40.8
(1.5)
A 		35.3
(0.8)
A 		28.7
(-0)
A 		9.5
(-2.4)
A 		5
(-3)
A 		48
B 2.7
(-3)
A 		47
(3)
A 		21.1
(-0.5)
A 		21.4
(-0.5)
A 		32.9
(1.1)
A 		27
(0.3)
A 		44
C 7.7
(-2.6)
A 		26.6
(-0.5)
A 		31.2
(0)
A 		57.7
(3)
A 		3.9
(-3)
A 		21.8
(-1)
A 		54
avr 21.1
(-1.5) 		38.1
(3) 		29.2
(0.6) 		35.9
(2.4) 		15.4
(-3) 		17.9
(-2.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 1.8
(-2.5)
A 		1
(-2.8)
A 		0.6
(-3)
A 		14.4
(3)
A 		14
B 0.7
(-3)
A 		1.4
(-2.8)
A 		0.8
(-3)
A 		22.2
(3)
M 		22
C 1.5
(-3)
A 		5.3
(-2.1)
A 		1.3
(-3)
A 		26.9
(3)
A 		26
avr 1.3
(-2.9) 		2.6
(-2.5) 		0.9
(-3) 		21.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.8
(0.9)
A 		14.5
(3)
A 		7.7
(-0.1)
A 		7.3
(-0.2)
A 		2.9
(-2.2)
A 		1.2
(-3)
A 		13
B 0.9
(-3)
A 		15.7
(3)
A 		5.1
(-1.3)
A 		5.7
(-1.1)
A 		13.4
(2.1)
A 		10.1
(0.7)
A 		15
C 2.9
(-2.1)
A 		8.1
(1)
A 		8
(0.9)
A 		11.6
(3)
A 		1.3
(-3)
A 		7.3
(0.5)
A 		10
avr 4.5
(-3) 		12.8
(3) 		6.9
(-1.3) 		8.2
(-0.3) 		5.9
(-2) 		6.2
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12438
Sequence Type Exemplar sequence
Representative Public ID T18H9.4 NCBI
Target Description T18H9.4 /REP_DB=WormBase Gene ID /WP=CE25114 /GEN=str-177 /TR=Q22547 /GB=AAA83330.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072982 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-177) (str-177) mRNA, complete cds. 11/11 None
SNAP00000040409 ENSEMBL cdna:SNAP chromosome:CEL140:V:9199270:9201355:-1 10/11 None
GENEFINDER00000040421 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9200336:9201572:-1 11/11 None
T18H9.4 ENSEMBL cdna:known chromosome:CEL140:V:9200268:9201572:-1 gene:T18H9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9200267-9201572(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-177
Ensembl T18H9.4
Entrez Gene 192023 Entrez gene
SwissProt Q22547 EMBL-EBI
WormBase CE38223 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83330 Seven tm receptor protein 177 [Caenorhabditis elegans] ref|NP_505383.2| Seven TM Receptor family member (str-177) [Caenorhabditis elegans] 0.0
blast AAA83330 Seven tm receptor protein 177 [Caenorhabditis elegans] ref|NP_505383.2| Seven TM Receptor family member (str-177) [Caenorhabditis elegans] 1.0E-172
blast CAE72128 Hypothetical protein CBG19224 [Caenorhabditis briggsae] 1.0E-143
blast AAA83330 Seven tm receptor protein 177 [Caenorhabditis elegans] ref|NP_505383.2| Seven TM Receptor family member (str-177) [Caenorhabditis elegans] 1.0E-116
blast CAE72128 Hypothetical protein CBG19224 [Caenorhabditis briggsae] 4.0E-96
blast CAE63973 Hypothetical protein CBG08563 [Caenorhabditis briggsae] 1.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.1E-21
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.4E-22
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.7E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505383.2 7 10-32,45-64,90-112,133-155,202-224,251-273,288-310
T18H9.4 7 10-32,45-64,90-112,133-155,202-224,251-273,288-310
SNAP00000040409 4 54-76,123-145,172-194,209-231
GENEFINDER00000040421 7 10-32,45-64,90-112,133-155,202-224,251-273,288-310
Sequence
Target Sequence 
>C. ELEGANS:191416_AT
gacgatgttgtttacgtgggaccatattactatatggaagacaaaaatggcattcacgac
atggattggacagccttctgggcgatggcgattgtctggcttttaattatgtcatctgcc
gtcacagtattcatctgtggttatgggtgctataagaaaataacaaaaggactagaggtt
tcctcaaattcgaaacaaaccaagtcgattcaaaaacaactgttctatgcattagtagtt
caatcagcaattccatttcttctcatgtacattccaagtacagtagttcttttctgtact
ttaattcaacttgacgtcggaagtgcaagcctattcataagttattccattgcaatatac
ccagtggtggatcctctacccacacttttcattgttcaaaattacagaaacgctgtcaaa
agtttaaatgatcacacggacttggaatattgtgacaagaaagaaagacatgaattcatc
agcacagataccatcttccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGATGTTGTTTACGTGGGACCAT 328 379 544 Antisense
ATGGCATTCACGACATGGATTGGAC 300 53 590 Antisense
ATTGGACAGCCTTCTGGGCGATGGC 353 3 608 Antisense
GCGATGGCGATTGTCTGGCTTTTAA 136 291 625 Antisense
GTCATCTGCCGTCACAGTATTCATC 632 467 654 Antisense
AATCAGCAATTCCATTTCTTCTCAT 441 171 785 Antisense
TTCTGTACTTTAATTCAACTTGACG 282 693 835 Antisense
GACGTCGGAAGTGCAAGCCTATTCA 21 379 856 Antisense
GTTATTCCATTGCAATATACCCAGT 27 449 884 Antisense
ATATACCCAGTGGTGGATCCTCTAC 554 19 898 Antisense
ATCAGCACAGATACCATCTTCCAAC 90 29 1021 Antisense
Sequence Source Affymetrix Proprietary Database