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[191413_s_at] 7TM chemoreceptor, srj family /// 7TM chemoreceptor, srj family

Description C05E4.10 /REP_DB=WormBase Gene ID /WP=CE25756 /GEN=srj-25 /TR=O17354 /GB=AAB71279.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 90      4grp_total > 0      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 20.5
(-0.5)
A 		2.5
(-3)
A 		45.3
(3)
A 		32.6
(1.2)
A 		43
B 14.4
(-2.5)
A 		23.9
(3)
A 		22
(1.9)
A 		13.5
(-3)
A 		10
C 44.9
(-1.7)
P 		18.9
(-3)
A 		26.2
(-2.6)
A 		136.5
(3)
P 		118
avr 26.6
(-1.5) 		15.1
(-3) 		31.2
(-0.9) 		60.9
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 33.2
(3)
A 		11.7
(-3)
A 		27
(1.3)
A 		30.3
(2.2)
A 		31.5
(2.5)
A 		18.7
(-1)
A 		22
B 20.8
(-0)
A 		21.2
(0)
A 		16.5
(-0.8)
A 		37.3
(3)
A 		28.4
(1.4)
A 		4.7
(-3)
A 		33
C 18.5
(1.4)
A 		24.6
(3)
A 		5.6
(-2)
A 		20.5
(1.9)
A 		1.7
(-3)
A 		24.7
(3)
A 		23
avr 24.2
(0.7) 		19.2
(-1.6) 		16.4
(-2.8) 		29.4
(3) 		20.5
(-1) 		16
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 7.4
(0.7)
A 		0.5
(-3)
A 		11.8
(3)
A 		4.8
(-0.7)
A 		11
B 4.6
(0.4)
A 		5.9
(3)
A 		5.1
(1.4)
A 		2.9
(-3)
A 		3
C 14.9
(0.2)
P 		5.4
(-3)
A 		9.1
(-1.7)
A 		23
(3)
P 		18
avr 9
(1.9) 		3.9
(-3) 		8.7
(1.6) 		10.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.1
(-0.8)
A 		4.1
(-3)
A 		5.9
(-1)
A 		7.7
(1)
A 		9.5
(3)
A 		4.6
(-2.4)
A 		5
B 7.2
(0.3)
A 		7
(0.2)
A 		4
(-1.6)
A 		9.9
(2)
A 		11.5
(3)
A 		1.8
(-3)
A 		10
C 6.9
(1.9)
A 		7.5
(2.4)
A 		1.4
(-2.3)
A 		4.1
(-0.2)
A 		0.5
(-3)
A 		8.3
(3)
A 		8
avr 6.7
(2.1) 		6.2
(1.2) 		3.8
(-3) 		7.2
(3) 		7.2
(3) 		4.9
(-1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191413_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15792
Sequence Type Exemplar sequence
Representative Public ID C05E4.10 NCBI
Target Description C05E4.10 /REP_DB=WormBase Gene ID /WP=CE25756 /GEN=srj-25 /TR=O17354 /GB=AAB71279.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070908(11), NM_070907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070908 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-24) (srj-24) mRNA, complete cds. 11/11 A 
NM_070907 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-25) (srj-25) mRNA, complete cds. 11/11 A 
SNAP00000009757 ENSEMBL cdna:SNAP chromosome:CEL140:V:736774:738700:-1 11/11 None
GENEFINDER00000009770 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:736774:738700:-1 11/11 None
GENEFINDER00000009772 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:734006:736101:-1 11/11 None
C05E4.10 ENSEMBL cdna:known chromosome:CEL140:V:734250:736101:-1 gene:C05E4.10 11/11 A 
C05E4.11 ENSEMBL cdna:known chromosome:CEL140:V:736774:738700:-1 gene:C05E4.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:734249-736101(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
7TM chemoreceptor, srj family
Gene Symbol srj-25
srj-24
Ensembl C05E4.10
C05E4.11
Entrez Gene 191942 Entrez gene
191943 Entrez gene
SwissProt O17354 EMBL-EBI
O17355 EMBL-EBI
WormBase CE25756 Wormbase
CE07944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71281 Serpentine receptor, class j protein 24 [Caenorhabditis elegans] ref|NP_503309.1| Serpentine Receptor, class J family member (srj-24) [Caenorhabditis elegans] 0.0
blast AAB71279 Serpentine receptor, class j protein 25 [Caenorhabditis elegans] ref|NP_503308.1| Serpentine Receptor, class J family member (srj-25) [Caenorhabditis elegans] 0.0
blast AAB71279 Serpentine receptor, class j protein 25 [Caenorhabditis elegans] ref|NP_503308.1| Serpentine Receptor, class J family member (srj-25) [Caenorhabditis elegans] 1.0E-171
blast AAB71281 Serpentine receptor, class j protein 24 [Caenorhabditis elegans] ref|NP_503309.1| Serpentine Receptor, class J family member (srj-24) [Caenorhabditis elegans] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.3E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.2E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503309.1 7 13-30,43-65,91-113,126-148,201-223,244-266,281-303
NP_503308.1 6 13-30,43-65,126-148,201-223,244-266,281-303
C05E4.10 6 13-30,43-65,126-148,201-223,244-266,281-303
C05E4.11 7 13-30,43-65,91-113,126-148,201-223,244-266,281-303
SNAP00000009757 5 13-30,42-64,116-138,159-181,196-218
GENEFINDER00000009770 7 13-30,43-65,91-113,126-148,201-223,244-266,281-303
GENEFINDER00000009772 6 13-30,43-65,121-143,196-218,239-261,276-298
Sequence
Target Sequence 
>C. ELEGANS:191413_S_AT
caattttatcggtggcatctgtgctgatctatacgattattggatttttaatcattcgta
aattacgaagcaacacgcttctaatgagcaagaagacaaaaaggctgcaagatcaactca
tgagagccttaattgtgcagtccgtaatcccgtcatttgtcagttttgctccaactatgg
cgtcctggtatgagccaatcattggctttcatctagggagagcagtttactacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTTATCGGTGGCATCTGTGCT 671 179 626 Antisense
GTGGCATCTGTGCTGATCTATACGA 4 491 637 Antisense
GTGCTGATCTATACGATTATTGGAT 574 479 646 Antisense
AAGCAACACGCTTCTAATGAGCAAG 363 151 693 Antisense
AAAGGCTGCAAGATCAACTCATGAG 203 121 725 Antisense
GAGAGCCTTAATTGTGCAGTCCGTA 94 395 747 Antisense
TTAATTGTGCAGTCCGTAATCCCGT 652 677 754 Antisense
GTCAGTTTTGCTCCAACTATGGCGT 321 467 784 Antisense
CCAACTATGGCGTCCTGGTATGAGC 29 277 796 Antisense
AATCATTGGCTTTCATCTAGGGAGA 295 171 822 Antisense
TCTAGGGAGAGCAGTTTACTACACT 153 609 837 Antisense
Sequence Source Affymetrix Proprietary Database