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[191412_at] 7TM chemoreceptor, srj family

Description C05E4.10 /REP_DB=WormBase Gene ID /WP=CE25756 /GEN=srj-25 /TR=O17354 /GB=AAB71279.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 50      4grp_total > 0      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 14.6
(-2.1)
A 		4.9
(-3)
A 		17.9
(-1.8)
A 		71.2
(3)
A 		66
B 15.8
(0.6)
A 		9.7
(-1.3)
A 		4.3
(-3)
A 		23.4
(3)
A 		19
C 2.9
(-3)
A 		3.8
(-2.6)
A 		15
(3)
A 		5.3
(-1.8)
A 		12
avr 11.1
(-1.9) 		6.1
(-3) 		12.4
(-1.6) 		33.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 18.7
(2.1)
A 		1.9
(-2.9)
A 		13
(0.4)
A 		21.9
(3)
A 		4.1
(-2.2)
A 		1.4
(-3)
A 		21
B 1.9
(-2.7)
A 		9.6
(-0.3)
A 		20.7
(3)
A 		4.1
(-2)
A 		0.8
(-3)
A 		2.4
(-2.5)
A 		20
C 13.8
(-0.3)
A 		8.8
(-1.4)
A 		19.6
(1)
A 		28.8
(3)
A 		1.7
(-3)
A 		17
(0.4)
A 		27
avr 11.5
(0.5) 		6.8
(-1.3) 		17.8
(2.8) 		18.3
(3) 		2.2
(-3) 		6.9
(-1.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.3
(-0.3)
A 		1.1
(-3)
A 		4.7
(-0.7)
A 		10.4
(3)
A 		9
B 5
(3)
A 		2.4
(-0.9)
A 		1
(-3)
A 		5
(3)
A 		4
C 0.9
(-3)
A 		1.1
(-2.7)
A 		5.2
(3)
A 		0.9
(-3)
A 		4
avr 3.7
(0.4) 		1.5
(-3) 		3.6
(0.2) 		5.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.4
(0.5)
A 		0.7
(-2.5)
A 		2.8
(-0.2)
A 		5.6
(3)
A 		1.2
(-2)
A 		0.3
(-3)
A 		5
B 0.7
(-2.5)
A 		3.2
(0.7)
A 		5
(3)
A 		1.1
(-2)
A 		0.3
(-3)
A 		0.9
(-2.2)
A 		5
C 5.1
(2.2)
A 		2.7
(-0.5)
A 		5
(2.1)
A 		5.8
(3)
A 		0.5
(-3)
A 		5.7
(2.9)
A 		5
avr 3.1
(1) 		2.2
(-0.5) 		4.3
(3) 		4.2
(2.8) 		0.7
(-3) 		2.3
(-0.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15792
Sequence Type Exemplar sequence
Representative Public ID C05E4.10 NCBI
Target Description C05E4.10 /REP_DB=WormBase Gene ID /WP=CE25756 /GEN=srj-25 /TR=O17354 /GB=AAB71279.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070907 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-25) (srj-25) mRNA, complete cds. 11/11 A 
GENEFINDER00000009772 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:734006:736101:-1 10/11 None
C05E4.10 ENSEMBL cdna:known chromosome:CEL140:V:734250:736101:-1 gene:C05E4.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:734249-736101(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-25
Ensembl C05E4.10
Entrez Gene 191943 Entrez gene
SwissProt O17354 EMBL-EBI
WormBase CE25756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71279 Serpentine receptor, class j protein 25 [Caenorhabditis elegans] ref|NP_503308.1| Serpentine Receptor, class J family member (srj-25) [Caenorhabditis elegans] 0.0
blast AAB71281 Serpentine receptor, class j protein 24 [Caenorhabditis elegans] ref|NP_503309.1| Serpentine Receptor, class J family member (srj-24) [Caenorhabditis elegans] 1.0E-171
blast AAB71279 Serpentine receptor, class j protein 25 [Caenorhabditis elegans] ref|NP_503308.1| Serpentine Receptor, class J family member (srj-25) [Caenorhabditis elegans] 1.0E-171
blast AAB71281 Serpentine receptor, class j protein 24 [Caenorhabditis elegans] ref|NP_503309.1| Serpentine Receptor, class J family member (srj-24) [Caenorhabditis elegans] 1.0E-145
blast NP_001024073 Serpentine Receptor, class J family member (srj-23) [Caenorhabditis elegans] gb|AAX22285.1| Serpentine receptor, class j protein 23, isoform b [Caenorhabditis elegans] 1.0E-132
blast NP_001024073 Serpentine Receptor, class J family member (srj-23) [Caenorhabditis elegans] gb|AAX22285.1| Serpentine receptor, class j protein 23, isoform b [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503308.1 6 13-30,43-65,126-148,201-223,244-266,281-303
C05E4.10 6 13-30,43-65,126-148,201-223,244-266,281-303
GENEFINDER00000009772 6 13-30,43-65,121-143,196-218,239-261,276-298
Sequence
Target Sequence 
>C. ELEGANS:191412_AT
ttttttactgcctttttcacttgagtttctggacaattacatgctatttttatataggag
ctgatttggagcggaaaatttacatgcaagatccgataatggatatttatgatgtagaat
ctgcaaagattaacatgattgtagctctttacaaggacggaagtgaaattgcgatacgaa
aatcaataactggaataattgcaaacacaattttatcggtggcatctgtgctgatctata
cgattattggatttttaatcattcgtaaattacgaagcaacacgcttctaatgagcaaga
agacaaaaaggctgcaagatcaactcatgagagccttaattgtgcagtccgtaatcccgt
catttgtcagttttgctccaactatggcgtcctggtatgagccaatcattggctttcatc
tagggagagcagtttactacactgcctcagttctagtctctacatttccattttttgacc
caaccgccataattttctttataccgtcgtttcgagcaaaatgcataaactttggaaaaa
atcttattacgctaggaaaggctgggaagaaatcgaagggaaacaataccgctcaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTTACTGCCTTTTTCACTTGAG 63 675 419 Antisense
GCCTTTTTCACTTGAGTTTCTGGAC 567 281 428 Antisense
GAGTTTCTGGACAATTACATGCTAT 406 399 441 Antisense
GAAAATTTACATGCAAGATCCGATA 399 353 492 Antisense
GATTAACATGATTGTAGCTCTTTAC 92 431 546 Antisense
GTAGCTCTTTACAAGGACGGAAGTG 439 457 559 Antisense
GGACGGAAGTGAAATTGCGATACGA 228 523 573 Antisense
GCCATAATTTTCTTTATACCGTCGT 190 279 904 Antisense
ATACCGTCGTTTCGAGCAAAATGCA 464 21 919 Antisense
ATTACGCTAGGAAAGGCTGGGAAGA 513 1 964 Antisense
GAAGGGAAACAATACCGCTCAAGTG 386 333 993 Antisense
Sequence Source Affymetrix Proprietary Database