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[191411_at] 7TM chemoreceptor, str family

Description T24A6.6 /REP_DB=WormBase Gene ID /WP=CE14134 /GEN=str-260 /TR=O61937 /GB=AAC17805.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_high1_10_10 > 10      4grp_high_8_8 > 31      6grp_total > 14      4grp_total > 20      6grp_cgc > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 104.5
(0.5)
P 		80.9
(-3)
M 		120.8
(3)
P 		110.7
(1.5)
P 		40
B 103.8
(-0.3)
P 		98.5
(-0.9)
P 		79.6
(-3)
A 		133.7
(3)
P 		54
C 95.3
(0.4)
P 		108.8
(1.5)
P 		50
(-3)
A 		128.9
(3)
P 		79
avr 101.2
(-0.4) 		96.1
(-1.2) 		83.5
(-3) 		124.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 139.1
(3)
A 		69.6
(-1.2)
P 		62.2
(-1.7)
P 		64.9
(-1.5)
A 		40.2
(-3)
A 		67.2
(-1.4)
P 		99
B 100
(1.1)
P 		128.5
(3)
P 		37.3
(-3)
A 		93.4
(0.7)
A 		59.4
(-1.5)
P 		46.3
(-2.4)
P 		91
C 102.4
(1.3)
A 		109.9
(1.8)
P 		123.4
(2.8)
P 		126.5
(3)
P 		41.6
(-3)
A 		60
(-1.7)
P 		85
avr 113.8
(3) 		102.7
(2) 		74.3
(-0.6) 		94.9
(1.3) 		47.1
(-3) 		57.8
(-2) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 38
(3)
P 		17.6
(-2.6)
M 		31.6
(1.2)
P 		16.2
(-3)
P 		22
B 33.1
(3)
P 		24.3
(-0.6)
P 		18.4
(-3)
A 		28.5
(1.1)
P 		15
C 31.5
(3)
P 		31.3
(2.9)
P 		17.4
(-3)
A 		21.7
(-1.2)
P 		14
avr 34.2
(3) 		24.4
(-1.9) 		22.5
(-2.8) 		22.1
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 25.6
(3)
A 		24.7
(2.6)
P 		13.5
(-2.4)
P 		16.5
(-1)
A 		12.1
(-3)
A 		16.4
(-1.1)
P 		14
B 34.8
(1.6)
P 		42.8
(3)
P 		9.1
(-3)
A 		24.7
(-0.2)
A 		24.1
(-0.3)
P 		17.2
(-1.6)
P 		34
C 38
(3)
A 		33.5
(1.9)
P 		31.4
(1.4)
P 		25.4
(-0.1)
P 		13.5
(-3)
A 		20.1
(-1.4)
P 		25
avr 32.8
(2.7) 		33.7
(3) 		18
(-2.5) 		22.2
(-1) 		16.6
(-3) 		17.9
(-2.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15712
Sequence Type Exemplar sequence
Representative Public ID T24A6.6 NCBI
Target Description T24A6.6 /REP_DB=WormBase Gene ID /WP=CE14134 /GEN=str-260 /TR=O61937 /GB=AAC17805.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071584 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-260) (str-260) mRNA, complete cds. 11/11 None
GENEFINDER00000027444 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3525120:3532599:1 9/11 None
T24A6.6 ENSEMBL cdna:known chromosome:CEL140:V:3527008:3530239:1 gene:T24A6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3527007-3530239(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-260
Ensembl T24A6.6
Entrez Gene 192046 Entrez gene
SwissProt O61937 EMBL-EBI
WormBase CE14134 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17805 Seven tm receptor protein 260 [Caenorhabditis elegans] ref|NP_503985.1| Seven TM Receptor family member (str-260) [Caenorhabditis elegans] 0.0
blast AAC17805 Seven tm receptor protein 260 [Caenorhabditis elegans] ref|NP_503985.1| Seven TM Receptor family member (str-260) [Caenorhabditis elegans] 1.0E-146
blast AAC17794 Hypothetical protein T24A6.7 [Caenorhabditis elegans] ref|NP_503984.1| T24A6.7 [Caenorhabditis elegans] 1.0E-114
blast AAC17793 Serpentine receptor, class bc (class b-like) protein 66 [Caenorhabditis elegans] ref|NP_503986.1| Serpentine Receptor, class BC (class B-like) family member (srbc-66) [Caenorhabditis elegans] 1.0E-112
blast AAB71282 Seven tm receptor protein 262 [Caenorhabditis elegans] ref|NP_503314.1| Seven TM Receptor family member (str-262) [Caenorhabditis elegans] 1.0E-109
blast CAE67621 Hypothetical protein CBG13173 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.4E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-4
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.1E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503985.1 7 10-27,39-57,89-108,128-150,202-224,251-273,288-307
T24A6.6 7 10-27,39-57,89-108,128-150,202-224,251-273,288-307
GENEFINDER00000027444 9 261-280,300-322,374-396,422-444,512-534,555-574,610-632,645-667,677-699
Sequence
Target Sequence 
>C. ELEGANS:191411_AT
tcattttcatgctcaccggagcgtttatcatgagctccaatggagatagcgataggtttc
tgagtgaaaattacccaaccctgcttggaaatgaaacaaaaattgaagatttatattatg
ttggcccattcttctggccgaaatataacaactttactacggatcaatattttaattgga
gaacagccgggggtgcgatgattgttatgggattgattagcctatccattgctataatgg
tgtattttggagtaaaagggtaccgaagcatgaataaacttatagcacagtcgaattcgt
cacaaaaatttcgaagtgtccaaaagcaactattcaacgctctggtacttcagactttca
ttcctgtacttttaatgcacattcctgcctccgcaatctattttacgatattttttgaca
agtgcacagaatatctgggcaagatttttacgttgactgtcgccatgtatcccaccttca
atccactgcccactatttttattgttaaaaattatcggaatgcgttgaaagattcgttga
tatgtgtggaagatgcagttttgcggcgatcaagaacggtgcatccgtcttcaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTTCATGCTCACCGGAGCGTT 463 619 431 Antisense
TGAGTGAAAATTACCCAACCCTGCT 434 567 491 Antisense
TATTATGTTGGCCCATTCTTCTGGC 397 663 544 Antisense
GAGAACAGCCGGGGGTGCGATGATT 120 391 609 Antisense
GCAACTATTCAACGCTCTGGTACTT 261 319 756 Antisense
GGTACTTCAGACTTTCATTCCTGTA 300 505 774 Antisense
TGCCTCCGCAATCTATTTTACGATA 182 583 816 Antisense
TTACGTTGACTGTCGCCATGTATCC 418 683 878 Antisense
ATCCACTGCCCACTATTTTTATTGT 279 41 911 Antisense
GAAGATGCAGTTTTGCGGCGATCAA 657 337 979 Antisense
AAGAACGGTGCATCCGTCTTCAACG 205 153 1002 Antisense
Sequence Source Affymetrix Proprietary Database