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[191410_at] 7TM chemoreceptor, str family

Description C07G3.4 /REP_DB=WormBase Gene ID /WP=CE07995 /GEN=str-226 /TR=O16325 /GB=AAB65382.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 85      4grp_total > 27      6grp_cgc > 67      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 18.2
(-3)
A 		30.2
(-1.4)
A 		20.9
(-2.6)
A 		63.9
(3)
A 		46
B 34.4
(1.1)
P 		44.1
(3)
A 		13.1
(-3)
A 		21
(-1.5)
A 		31
C 1.9
(-3)
A 		16.1
(0.9)
A 		4.9
(-2.2)
A 		24
(3)
A 		22
avr 18.2
(-1.7) 		30.1
(1.4) 		13
(-3) 		36.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 6.2
(-2.8)
A 		7.4
(-2.7)
A 		4.6
(-3)
A 		17.3
(-1.7)
A 		44.1
(1)
A 		63.8
(3)
A 		59
B 20.2
(-0.9)
A 		43.6
(3)
A 		22.4
(-0.5)
A 		7.5
(-3)
A 		20
(-0.9)
A 		20.3
(-0.9)
A 		36
C 17.9
(-1.2)
A 		3.4
(-3)
A 		43
(1.9)
A 		51.7
(3)
A 		15.2
(-1.5)
A 		17.2
(-1.3)
A 		48
avr 14.8
(-3) 		18.1
(-2) 		23.3
(-0.3) 		25.5
(0.4) 		26.4
(0.7) 		33.8
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.6
(-1.3)
A 		6.6
(-1.3)
A 		5.5
(-3)
A 		9.4
(3)
A 		4
B 11
(3)
P 		10.9
(2.9)
A 		3
(-3)
A 		4.5
(-1.9)
A 		8
C 0.6
(-3)
A 		4.6
(3)
A 		1.7
(-1.4)
A 		4
(2.1)
A 		4
avr 6.1
(1.1) 		7.4
(3) 		3.4
(-3) 		6
(0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2.6
(-2.3)
A 		1
(-3)
A 		4.4
(-1.6)
A 		13.3
(2.1)
A 		15.5
(3)
A 		15
B 7
(-0.6)
A 		14.5
(3)
A 		5.4
(-1.4)
A 		2
(-3)
A 		8.1
(-0.1)
A 		7.6
(-0.3)
A 		13
C 6.6
(0.4)
A 		1
(-3)
A 		10.9
(3)
A 		10.4
(2.7)
A 		4.9
(-0.6)
A 		5.8
(-0.1)
A 		10
avr 4.9
(-3) 		6
(-1.6) 		5.8
(-1.9) 		5.6
(-2.1) 		8.8
(2) 		9.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15259
Sequence Type Exemplar sequence
Representative Public ID C07G3.4 NCBI
Target Description C07G3.4 /REP_DB=WormBase Gene ID /WP=CE07995 /GEN=str-226 /TR=O16325 /GB=AAB65382.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071580(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071580 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-226) (str-226) mRNA, complete cds. 11/11 None
SNAP00000037800 ENSEMBL cdna:SNAP chromosome:CEL140:V:3512507:3514169:1 9/11 None
GENEFINDER00000037810 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3512507:3514169:1 11/11 None
C07G3.4 ENSEMBL cdna:known chromosome:CEL140:V:3512507:3514169:1 gene:C07G3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3512506-3514169(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-226
Ensembl C07G3.4
Entrez Gene 192036 Entrez gene
SwissProt O16325 EMBL-EBI
WormBase CE07995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65382 Seven tm receptor protein 226 [Caenorhabditis elegans] ref|NP_503981.1| Seven TM Receptor family member (str-226) [Caenorhabditis elegans] 0.0
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 1.0E-164
blast AAB65383 Seven tm receptor protein 228 [Caenorhabditis elegans] ref|NP_503980.1| Seven TM Receptor family member (str-228) [Caenorhabditis elegans] 1.0E-159
blast AAB65382 Seven tm receptor protein 226 [Caenorhabditis elegans] ref|NP_503981.1| Seven TM Receptor family member (str-226) [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.8E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.1E-17
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503981.1 7 10-32,45-67,91-113,134-156,205-227,252-274,289-311
C07G3.4 7 10-32,45-67,91-113,134-156,205-227,252-274,289-311
SNAP00000037800 7 10-32,45-67,92-114,152-169,173-195,207-229,244-266
GENEFINDER00000037810 7 10-32,45-67,91-113,134-156,205-227,252-274,289-311
Sequence
Target Sequence 
>C. ELEGANS:191410_AT
gatatattctctcagcgccgaatgagcatacctcgaggttcataaaggacaatataaaag
agatattcgaattgaagattgatgcgtatgtttacttgggaccatttctctacgagagag
ctgataatggaactgttaatgtgcacattgtgccatttattgggctggccataatttctg
gaaccattatatcttctgtcacaatcgtcctcgtctttggtattttatgctaccaaaaaa
tcagttgtctcgttgccatcacagtaggctctggcaaacttatcaaacttcagcgtcaac
ttttcttcgcacttgtcattcaaactcttgtaccatttcttttaatgcatatcccagcag
ctataatgtttgcatttgtcttcctggacattgatctaggtgtctacagtgcagttgtat
caatgaccattgcaatttatccggcagttgatcctattccgacgctggttattgtgaaaa
actacagaaaagccattatcagctacttgtcattagaatgcgttaggaaatctccagtcc
ctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATATTCTCTCAGCGCCGAATGA 598 425 467 Antisense
GCGCCGAATGAGCATACCTCGAGGT 437 285 481 Antisense
GGGCTGGCCATAATTTCTGGAACCA 328 493 628 Antisense
GGAACCATTATATCTTCTGTCACAA 222 531 646 Antisense
ATCGTCCTCGTCTTTGGTATTTTAT 560 31 670 Antisense
GTCTCGTTGCCATCACAGTAGGCTC 67 471 713 Antisense
GGCTCTGGCAAACTTATCAAACTTC 306 539 733 Antisense
TTTTCTTCGCACTTGTCATTCAAAC 274 677 767 Antisense
TCAAACTCTTGTACCATTTCTTTTA 619 629 786 Antisense
TAATGTTTGCATTTGTCTTCCTGGA 38 637 830 Antisense
TGCGTTAGGAAATCTCCAGTCCCTG 167 579 985 Antisense
Sequence Source Affymetrix Proprietary Database