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[191409_at] 7TM receptor, srx family

Description F09F3.13 /REP_DB=WormBase Gene ID /WP=CE09295 /TR=P90825 /GB=CAB02909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 24      4grp_total > 30      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 55.4
(1.9)
A 		10.9
(-2.8)
A 		9.3
(-3)
A 		66.3
(3)
A 		57
B 71.8
(3)
A 		34.4
(-0.4)
A 		6.4
(-3)
A 		26.6
(-1.1)
A 		65
C 49.8
(3)
A 		34.3
(-1.3)
A 		28.4
(-3)
A 		43.1
(1.1)
A 		21
avr 59
(3) 		26.5
(-1.4) 		14.7
(-3) 		45.3
(1.1) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 52.9
(3)
A 		44.6
(1.9)
A 		37.1
(0.9)
A 		12.5
(-2.3)
A 		7.4
(-3)
A 		10.9
(-2.5)
A 		46
B 45.9
(0.5)
P 		72.1
(3)
A 		33.9
(-0.7)
A 		9.5
(-3)
A 		10.3
(-2.9)
A 		10.7
(-2.9)
A 		63
C 45.1
(2.1)
A 		35.6
(0.8)
A 		33
(0.5)
A 		51.4
(3)
A 		8.8
(-2.9)
A 		8.1
(-3)
A 		43
avr 48
(2.6) 		50.8
(3) 		34.7
(0.7) 		24.5
(-0.8) 		8.8
(-3) 		9.9
(-2.8) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 20.2
(3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		9.7
(-0.5)
A 		18
B 22.9
(3)
A 		8.5
(-1)
A 		1.5
(-3)
A 		5.7
(-1.8)
A 		21
C 16.5
(3)
A 		9.9
(-1.3)
A 		9.9
(-1.3)
A 		7.3
(-3)
A 		9
avr 19.9
(3) 		6.9
(-2.1) 		4.6
(-3) 		7.6
(-1.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.8
(0.3)
A 		15.9
(3)
A 		8.1
(-0.4)
A 		3.2
(-2.6)
A 		2.2
(-3)
A 		2.6
(-2.8)
A 		14
B 16
(0.8)
P 		24
(3)
A 		8.2
(-1.4)
A 		2.5
(-3)
A 		4.2
(-2.5)
A 		4
(-2.6)
A 		22
C 16.7
(3)
A 		10.8
(0.5)
A 		8.4
(-0.6)
A 		10.3
(0.3)
A 		2.8
(-3)
A 		2.7
(-3)
A 		14
avr 14.2
(1.8) 		16.9
(3) 		8.2
(-0.8) 		5.3
(-2) 		3.1
(-3) 		3.1
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13966
Sequence Type Exemplar sequence
Representative Public ID F09F3.13 NCBI
Target Description F09F3.13 /REP_DB=WormBase Gene ID /WP=CE09295 /TR=P90825 /GB=CAB02909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074036 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-137) (srx-137) mRNA, complete cds. 11/11 None
SNAP00000022395 ENSEMBL cdna:SNAP chromosome:CEL140:V:13865394:13866699:1 11/11 None
GENEFINDER00000022406 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13865394:13866699:1 11/11 None
F09F3.13 ENSEMBL cdna:known chromosome:CEL140:V:13865394:13866699:1 gene:F09F3.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13865393-13866699(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-137
Ensembl F09F3.13
Entrez Gene 184258 Entrez gene
SwissProt P90825 EMBL-EBI
WormBase CE09295 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02909 Hypothetical protein F09F3.13 [Caenorhabditis elegans] ref|NP_506437.1| Serpentine Receptor, class X family member (srx-137) [Caenorhabditis elegans] 1.0E-172
blast CAE66220 Hypothetical protein CBG11462 [Caenorhabditis briggsae] 1.0E-150
blast CAF31478 Hypothetical protein F55B12.9 [Caenorhabditis elegans] ref|NP_001023977.1| Serpentine Receptor, class X family member (srx-129) [Caenorhabditis elegans] 2.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506437.1 7 5-27,53-74,89-111,123-145,176-198,219-241,251-273
F09F3.13 7 5-27,53-74,89-111,123-145,176-198,219-241,251-273
SNAP00000022395 7 5-27,53-74,89-111,123-145,176-198,219-241,251-273
GENEFINDER00000022406 7 5-27,53-74,89-111,123-145,176-198,219-241,251-273
Sequence
Target Sequence 
>C. ELEGANS:191409_AT
atttcccatttcgtcagcataagtcaaaaagatcttatgtgacatattttgcaattgctg
tatgtcttggactagcaattacctatactttgctaggtttaagaaaactgtgcgcctacg
tctatgaccccgagatattttcatggagagttgaagaatccacatgtgctgatcaaatga
caactcttattttctggtcaatcattgtcctcgctgtcacctctaacagttttaatgtac
ttactgctatcaagttcctgtgtactcagagttccggaatgcgacaagctgatgctgccc
gaagaagaaagaagcgtctatggctctttgtgcaatgtgtcatacaggactgtctgcatc
tgacagacctaataaacagtatttttatattcgagctcagcgacaaagtctggttccgtt
atatctttctgtgctactcgtttcttgcaatacacgccgcggatggaatagtcatgcttt
actttaacccggaagttcaaccaaagtggttccggcagataacaaatggccgtcattcgt
ctagaactgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCCATTTCGTCAGCATAAGTC 389 17 347 Antisense
AAGAAAACTGTGCGCCTACGTCTAT 52 151 447 Antisense
TTTCTGGTCAATCATTGTCCTCGCT 424 671 537 Antisense
CTCGCTGTCACCTCTAACAGTTTTA 428 233 556 Antisense
ACTGCTATCAAGTTCCTGTGTACTC 8 99 589 Antisense
AATGCGACAAGCTGATGCTGCCCGA 172 167 624 Antisense
AGAAGCGTCTATGGCTCTTTGTGCA 654 73 656 Antisense
GCTCAGCGACAAAGTCTGGTTCCGT 583 299 741 Antisense
TTTCTGTGCTACTCGTTTCTTGCAA 115 671 772 Antisense
TAGTCATGCTTTACTTTAACCCGGA 257 653 815 Antisense
TGGCCGTCATTCGTCTAGAACTGGA 507 543 873 Antisense
Sequence Source Affymetrix Proprietary Database