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[191408_s_at]

Description F13H10.3 /REP_DB=WormBase Gene ID /WP=CE27959 /TR=SW:Q19425 /GB=CAA92953.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YEH4 like protein
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 72      6grp_total > 85      4grp_total > 60      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 390.1
(2.6)
P 		379.1
(2.3)
P 		400
(3)
P 		231.7
(-3)
P 		168
B 364.4
(3)
P 		304.7
(-3)
P 		311.7
(-2.3)
P 		332
(-0.3)
P 		60
C 367.6
(-3)
P 		402.6
(0.4)
P 		428.5
(3)
P 		407.7
(1)
P 		61
avr 374
(2.3) 		362.1
(1.1) 		380.1
(3) 		323.8
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 313.2
(-3)
P 		396.3
(-0.9)
P 		422.1
(-0.2)
P 		515.2
(2.2)
P 		445.1
(0.4)
P 		547.3
(3)
P 		234
B 307.6
(-3)
P 		369.2
(-0.8)
P 		326.4
(-2.3)
P 		415.6
(0.8)
P 		474.6
(2.8)
P 		479
(3)
P 		171
C 331.5
(-3)
P 		370.6
(-1.9)
P 		417
(-0.6)
P 		545.8
(3)
P 		401.9
(-1)
P 		480.4
(1.2)
P 		214
avr 317.4
(-3) 		378.7
(-1) 		388.5
(-0.7) 		492.2
(2.7) 		440.5
(1) 		502.2
(3) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 142
(3)
P 		82.3
(-0.3)
P 		104.6
(0.9)
P 		33.9
(-3)
P 		108
B 116.2
(3)
P 		75.3
(-2.4)
P 		72.2
(-2.8)
P 		70.8
(-3)
P 		45
C 121.7
(0.9)
P 		115.7
(0.5)
P 		149.3
(3)
P 		68.7
(-3)
P 		81
avr 126.6
(3) 		91.1
(-0.1) 		108.7
(1.4) 		57.8
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 57.7
(-3)
P 		141
(3)
P 		91.9
(-0.5)
P 		130.7
(2.3)
P 		134.3
(2.5)
P 		133.3
(2.4)
P 		83
B 107
(-1.5)
P 		122.9
(-0.7)
P 		79.2
(-3)
P 		110.1
(-1.4)
P 		192.8
(3)
P 		178.6
(2.3)
P 		114
C 122.9
(-1.2)
P 		113.1
(-2.2)
P 		106.1
(-3)
P 		109.8
(-2.6)
P 		130.1
(-0.4)
P 		160.8
(3)
P 		55
avr 95.9
(-2.7) 		125.7
(0.1) 		92.4
(-3) 		116.9
(-0.7) 		152.4
(2.5) 		157.6
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191408_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10246
Sequence Type Exemplar sequence
Representative Public ID F13H10.3 NCBI
Target Description F13H10.3 /REP_DB=WormBase Gene ID /WP=CE27959 /TR=SW:Q19425 /GB=CAA92953.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YEH4 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171417(11), NM_171917(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171417 NCBI Caenorhabditis elegans F13H10.3a (F13H10.3) mRNA, complete cds. 11/11 None
NM_171917 NCBI Caenorhabditis elegans F13H10.3b (F13H10.3) mRNA, complete cds. 11/11 None
SNAP00000039794 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11012483:11015661:-1 11/11 None
GENEFINDER00000039799 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11010092:11015853:-1 11/11 None
F13H10.3a ENSEMBL cdna:known chromosome:CEL140:IV:11012101:11015853:-1 gene:F13H10.3 11/11 A 
F13H10.3b ENSEMBL cdna:known chromosome:CEL140:IV:11012483:11015853:-1 gene:F13H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11012488-11015859(-) 100.0 100.0
Public Domain and Genome References
Ensembl F13H10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92953 Hypothetical protein F13H10.3a [Caenorhabditis elegans] ref|NP_741486.1| F13H10.3a [Caenorhabditis elegans] sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV 0.0
blast CAD27622 Hypothetical protein F13H10.3b [Caenorhabditis elegans] ref|NP_741487.1| F13H10.3b [Caenorhabditis elegans] 0.0
blast T20863 hypothetical protein F13H10.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 8.9E-12
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 8.9E-12
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 8.9E-12
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 4.2E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741486.1 11 166-188,193-215,247-269,342-360,372-389,415-437,450-472,496-518,531-553,558-575,596-614
NP_741487.1 11 168-190,195-217,249-271,344-362,374-391,417-439,452-474,498-520,533-555,560-577,598-616
F13H10.3a 11 166-188,193-215,247-269,342-360,372-389,415-437,450-472,496-518,531-553,558-575,596-614
F13H10.3b 11 168-190,195-217,249-271,344-362,374-391,417-439,452-474,498-520,533-555,560-577,598-616
SNAP00000039794 11 134-156,161-183,215-237,310-328,340-357,383-405,418-440,464-486,499-521,526-543,564-582
GENEFINDER00000039799 12 166-188,193-215,247-269,342-360,372-389,415-437,450-472,496-518,531-553,558-575,596-615,638-660
Sequence
Target Sequence 
>C. ELEGANS:191408_S_AT
gcattttcctgctctgagtggtactctcacactctcatatttcattcataatgctgttct
cactattcttcgaaatcagaaacatccagagaataatgcaagagatttatcgataggata
ttgtttggttgctttttgctatgttttcattgggttcacatttttcgccgcgtttcccgt
tcaaagaagttgcattagtgataacttcctaaacaattttggagctggtgacgtgctatc
ctcaactgctcgtcttttccttttattccaaatgatcacagttcttccattgttgatgtt
tctcgttcgctctcaacttttctacgcaatttttggacaaacatggcctggagcgattag
agttataattcttaatgttttgcttattgctgttgcggtcggatttgcaacattttatcc
aaatgttggaagtattttaagatatgtgggatcaatttctggattagtttatgtatttgc
ccttcctgcaatggtttatattaaacaaagtgaagcggctggaacattaactcccatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTTTCCTGCTCTGAGTGGTACT 162 309 1272 Antisense
TCTCACACTCTCATATTTCATTCAT 597 613 1296 Antisense
ATAATGCTGTTCTCACTATTCTTCG 677 25 1319 Antisense
GGTTGCTTTTTGCTATGTTTTCATT 529 507 1398 Antisense
TTGGAGCTGGTGACGTGCTATCCTC 10 709 1490 Antisense
TCGTCTTTTCCTTTTATTCCAAATG 687 603 1521 Antisense
CCATTGTTGATGTTTCTCGTTCGCT 137 269 1558 Antisense
GTTTTGCTTATTGCTGTTGCGGTCG 396 447 1648 Antisense
TTAGTTTATGTATTTGCCCTTCCTG 96 661 1735 Antisense
GCCCTTCCTGCAATGGTTTATATTA 21 287 1750 Antisense
GCGGCTGGAACATTAACTCCCATGA 97 293 1786 Antisense
Sequence Source Affymetrix Proprietary Database