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[191407_s_at] laccase like copper oxidase

Description F21D5.3 /REP_DB=WormBase Gene ID /WP=CE03246 /TR=Q19687 /GB=CAA91039.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=laccase like copper oxidase
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 55      6grp_total > 64      4grp_total > 63      6grp_high1_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 612
1 2 3 4 range
A 1511.7
(2.1)
P 		1383
(0.2)
P 		1574.1
(3)
P 		1166.2
(-3)
P 		408
B 1674.8
(3)
P 		1305.3
(-3)
P 		1454.2
(-0.6)
P 		1373.8
(-1.9)
P 		370
C 1484.5
(-0.1)
P 		1217
(-3)
P 		1778.1
(3)
P 		1305.7
(-2.1)
P 		561
avr 1557
(2.2) 		1301.8
(-2.6) 		1602.1
(3) 		1281.9
(-3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1404
1 2 3 4 5 6 range
A 1155.6
(-3)
P 		1549.4
(-1.3)
P 		2380.3
(2.2)
P 		2559.6
(3)
P 		1398.2
(-2)
P 		1581.9
(-1.2)
P 		1404
B 1240.4
(-3)
P 		1700.4
(-0.5)
P 		2318.2
(2.9)
P 		2138.9
(1.9)
P 		1646.6
(-0.8)
P 		2337.7
(3)
P 		1097
C 1164.3
(-3)
P 		1737.3
(0)
P 		1900.2
(0.9)
P 		2296.1
(3)
P 		1294.3
(-2.3)
P 		2282.3
(2.9)
P 		1132
avr 1186.8
(-3) 		1662.4
(-0.5) 		2199.6
(2.3) 		2331.5
(3) 		1446.4
(-1.6) 		2067.3
(1.6) 		1145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 550.4
(3)
P 		300.2
(-1)
P 		411.5
(0.8)
P 		170.7
(-3)
P 		380
B 534.1
(3)
P 		322.4
(-2.3)
P 		337
(-1.9)
P 		292.8
(-3)
P 		241
C 491.4
(1.1)
P 		349.9
(-1.1)
P 		619.7
(3)
P 		220.2
(-3)
P 		400
avr 525.3
(3) 		324.2
(-1.1) 		456.1
(1.6) 		227.9
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 659
1 2 3 4 5 6 range
A 213
(-3)
P 		551.1
(1.7)
P 		518.4
(1.2)
P 		649.2
(3)
P 		421.9
(-0.1)
P 		385.1
(-0.6)
P 		436
B 431.6
(-3)
P 		566
(-1.2)
P 		562.9
(-1.2)
P 		566.5
(-1.2)
P 		669
(0.2)
P 		871.7
(3)
P 		440
C 431.6
(-2.8)
P 		530.1
(-1.1)
P 		483.6
(-1.9)
P 		461.7
(-2.3)
P 		418.8
(-3)
P 		764
(3)
P 		345
avr 358.7
(-3) 		549.1
(0.6) 		521.6
(0.1) 		559.1
(0.8) 		503.2
(-0.2) 		673.6
(3) 		315
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191407_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9612
Sequence Type Exemplar sequence
Representative Public ID F21D5.3 NCBI
Target Description F21D5.3 /REP_DB=WormBase Gene ID /WP=CE03246 /TR=Q19687 /GB=CAA91039.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=laccase like copper oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069101 NCBI Caenorhabditis elegans F21D5.3 (F21D5.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000028051 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8730809:8735587:1 11/11 None
F21D5.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:8730703:8735651:1 gene:F21D5.3 11/11 None
F21D5.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:8730797:8735641:1 gene:F21D5.3 11/11 None
F21D5.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:8730802:8735641:1 gene:F21D5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028038 2/11 Cross Hyb Matching Probes None
SNAP00000028039 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8730904-8735593(+) 100.0 100.0
Public Domain and Genome References
Gene Title laccase like copper oxidase
Ensembl F21D5.3
Entrez Gene 177680 Entrez gene
SwissProt Q19687 EMBL-EBI
WormBase CE03246 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246021_AT L-ascorbate oxidase, putative at
DROSOPHILA_2:1625245_AT dm
DROSGENOME1:146086_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91039 Hypothetical protein F21D5.3 [Caenorhabditis elegans] ref|NP_501502.1| F21D5.3 [Caenorhabditis elegans] 0.0
blast CAE70028 Hypothetical protein CBG16448 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001117 EMBL-EBI Multicopper oxidase, type 1 3.2E-17
Pfam IPR001117 EMBL-EBI Multicopper oxidase, type 1 3.2E-17
Sequence
Target Sequence 
>C. ELEGANS:191407_S_AT
gatactattacattgccagttggaggatatatcactattcgattccgtgctgtaaatcca
ggatggtggtttgctcattgtcacttggaacttcatttaatgggtggaactggatatgca
tataaggttggtgatcaaaatcaaatctacatgccacctgacaatttcccgcatgattgt
ggtgtcttcaaagttgataaattaccagaattaaggcttccaactcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTATTACATTGCCAGTTGGAG 487 423 1855 Antisense
GCCAGTTGGAGGATATATCACTATT 315 281 1869 Antisense
TATCACTATTCGATTCCGTGCTGTA 174 661 1884 Antisense
CCGTGCTGTAAATCCAGGATGGTGG 78 259 1899 Antisense
GGATGGTGGTTTGCTCATTGTCACT 369 515 1915 Antisense
TGCTCATTGTCACTTGGAACTTCAT 338 581 1926 Antisense
GTCACTTGGAACTTCATTTAATGGG 247 463 1934 Antisense
TGGGTGGAACTGGATATGCATATAA 430 551 1955 Antisense
CACCTGACAATTTCCCGCATGATTG 572 201 2009 Antisense
TTTCCCGCATGATTGTGGTGTCTTC 635 669 2019 Antisense
ACCAGAATTAAGGCTTCCAACTCAA 1 87 2058 Antisense
Sequence Source Affymetrix Proprietary Database