[Home] | [Total List]

[191406_at] laccase like copper oxidase

Description F21D5.3 /REP_DB=WormBase Gene ID /WP=CE03246 /TR=Q19687 /GB=CAA91039.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=laccase like copper oxidase
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 73      4grp_highest_8_8 > 28      4grp_high_8_8 > 63      6grp_highest_nonorm > 72      6grp_total > 74      4grp_total > 40      6grp_high1_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 426.7
(2.6)
P 		346.1
(-3)
P 		431.9
(3)
P 		403.9
(1)
P 		86
B 401.1
(-2)
P 		404.1
(-1.7)
P 		388.5
(-3)
P 		461.9
(3)
P 		73
C 463.1
(-2)
P 		464.8
(-1.9)
P 		585.2
(3)
P 		438.1
(-3)
P 		147
avr 430.3
(-0.6) 		405
(-3) 		468.5
(3) 		434.6
(-0.2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 302.1
(-3)
P 		360
(-2.2)
P 		617.5
(1.3)
P 		741.3
(3)
P 		424.6
(-1.3)
P 		410.7
(-1.5)
P 		439
B 321
(-3)
P 		398.9
(-1.2)
P 		544.3
(2.3)
P 		476.9
(0.7)
P 		384.6
(-1.5)
P 		574.8
(3)
P 		254
C 392.3
(-3)
P 		404.1
(-2.7)
P 		432.4
(-2)
P 		626.7
(3)
P 		399.8
(-2.8)
P 		606.7
(2.5)
P 		234
avr 338.5
(-3) 		387.7
(-1.9) 		531.4
(1.2) 		615
(3) 		403
(-1.6) 		530.7
(1.2) 		277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 155.4
(3)
P 		75.1
(-2)
P 		112.9
(0.4)
P 		59.1
(-3)
P 		96
B 127.9
(3)
P 		99.8
(-1.4)
P 		90
(-3)
P 		98.4
(-1.7)
P 		38
C 153.3
(0.7)
P 		133.6
(-0.2)
P 		204
(3)
P 		73.9
(-3)
P 		130
avr 145.5
(3) 		102.8
(-0.7) 		135.6
(2.1) 		77.1
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 55.7
(-3)
P 		128
(0.3)
P 		134.5
(0.6)
P 		188
(3)
P 		128.1
(0.3)
P 		100
(-1)
P 		132
B 111.7
(-3)
P 		132.8
(-1.8)
P 		132.2
(-1.8)
P 		126.3
(-2.1)
P 		156.3
(-0.4)
P 		214.4
(3)
P 		103
C 145.4
(-0.7)
P 		123.3
(-2.1)
P 		110
(-3)
P 		126
(-2)
P 		129.4
(-1.7)
P 		203.1
(3)
P 		93
avr 104.3
(-3) 		128
(-0.9) 		125.6
(-1.1) 		146.8
(0.7) 		137.9
(-0) 		172.5
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9612
Sequence Type Exemplar sequence
Representative Public ID F21D5.3 NCBI
Target Description F21D5.3 /REP_DB=WormBase Gene ID /WP=CE03246 /TR=Q19687 /GB=CAA91039.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=laccase like copper oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069101 NCBI Caenorhabditis elegans F21D5.3 (F21D5.3) mRNA, complete cds. 11/11 A 
SNAP00000028038 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8731294:8734396:1 11/11 None
GENEFINDER00000028051 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8730809:8735587:1 11/11 None
F21D5.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:8730703:8735651:1 gene:F21D5.3 11/11 None
F21D5.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:8730797:8735641:1 gene:F21D5.3 11/11 None
F21D5.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:8730802:8735641:1 gene:F21D5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8730904-8735593(+) 100.0 100.0
Public Domain and Genome References
Gene Title laccase like copper oxidase
Ensembl F21D5.3
Entrez Gene 177680 Entrez gene
SwissProt Q19687 EMBL-EBI
WormBase CE03246 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246021_AT L-ascorbate oxidase, putative at
DROSOPHILA_2:1625245_AT dm
DROSGENOME1:146086_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91039 Hypothetical protein F21D5.3 [Caenorhabditis elegans] ref|NP_501502.1| F21D5.3 [Caenorhabditis elegans] 0.0
blast CAE70028 Hypothetical protein CBG16448 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001117 EMBL-EBI Multicopper oxidase, type 1 3.2E-17
Pfam IPR001117 EMBL-EBI Multicopper oxidase, type 1 3.2E-17
Pfam IPR001117 EMBL-EBI Multicopper oxidase, type 1 3.2E-17
Sequence
Target Sequence 
>C. ELEGANS:191406_AT
aactcaatgtcagatctcgatacaacatgtcgttgtttctatcatttggagcataaatta
aataatattgtgcaaataaccctttataatatgggacttggtggtgcaatgggaactggt
tatgctcatccattccatcttcatggacatcatttttatgtgatgaaagttggatggcca
tcgtataatggatctggatttattgatcaaatgaatcaagatattgattgtcctggacga
gatgttagttgtaatggaaagaaatggagaaataaagattggttaggtggagcattaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCAATGTCAGATCTCGATACAA 212 141 1525 Antisense
CAGATCTCGATACAACATGTCGTTG 259 205 1535 Antisense
TGTCGTTGTTTCTATCATTTGGAGC 535 557 1552 Antisense
AATATTGTGCAAATAACCCTTTATA 625 173 1588 Antisense
GGGACTTGGTGGTGCAATGGGAACT 18 493 1617 Antisense
GGGAACTGGTTATGCTCATCCATTC 185 495 1635 Antisense
GCTCATCCATTCCATCTTCATGGAC 175 301 1648 Antisense
GGATGGCCATCGTATAATGGATCTG 233 515 1696 Antisense
TCAAGATATTGATTGTCCTGGACGA 228 633 1740 Antisense
TGTCCTGGACGAGATGTTAGTTGTA 539 555 1753 Antisense
AAGATTGGTTAGGTGGAGCATTAGA 200 155 1799 Antisense
Sequence Source Affymetrix Proprietary Database