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[191403_s_at]

Description T08G11.1 /REP_DB=WormBase Gene ID /WP=CE13443 /TR=Q94010 /GB=CAB02304.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nucleotide binding protein
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 57      6grp_total > 46      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1832
1 2 3 4 range
A 2806.6
(3)
P 		1769
(-0.4)
P 		1497.9
(-1.3)
P 		974.8
(-3)
P 		1832
B 2682.2
(3)
P 		1594.4
(-1)
P 		1608.6
(-0.9)
P 		1036.4
(-3)
P 		1646
C 2483.6
(3)
P 		1396.8
(-1.4)
P 		1874.8
(0.5)
P 		995.7
(-3)
P 		1488
avr 2657.5
(3) 		1586.7
(-0.9) 		1660.4
(-0.6) 		1002.3
(-3) 		1655

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1048
1 2 3 4 5 6 range
A 2218.9
(-1)
P 		2912.8
(3)
P 		1865.2
(-3)
P 		2311.1
(-0.4)
P 		2064.4
(-1.9)
P 		2631.4
(1.4)
P 		1048
B 2679.7
(3)
P 		2479.3
(1.5)
P 		2518.9
(1.8)
P 		2327.1
(0.3)
P 		1899.6
(-3)
P 		2453.3
(1.3)
P 		780
C 2776.6
(2.7)
P 		2223.3
(-2)
P 		2816.4
(3)
P 		2098
(-3)
P 		2282.7
(-1.5)
P 		2613.3
(1.3)
P 		718
avr 2558.4
(2.9) 		2538.5
(2.7) 		2400.2
(0.9) 		2245.4
(-1) 		2082.2
(-3) 		2566
(3) 		484
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 879
1 2 3 4 range
A 1021.9
(3)
P 		384
(-1.4)
P 		391.6
(-1.3)
P 		142.7
(-3)
P 		879
B 855.3
(3)
P 		393.8
(-1.4)
P 		372.8
(-1.6)
P 		220.8
(-3)
P 		635
C 822.1
(3)
P 		401.6
(-0.9)
P 		653.4
(1.5)
P 		167.9
(-3)
P 		654
avr 899.8
(3) 		393.1
(-1.2) 		472.6
(-0.5) 		177.1
(-3) 		723

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 630
1 2 3 4 5 6 range
A 409
(-3)
P 		1035.9
(3)
P 		406.2
(-3)
P 		586.1
(-1.3)
P 		622.9
(-0.9)
P 		640.7
(-0.8)
P 		630
B 932.4
(3)
P 		825.2
(1)
P 		611.7
(-3)
P 		616.4
(-2.9)
P 		771.8
(-0)
P 		914.8
(2.7)
P 		321
C 1029.2
(3)
P 		678.4
(-0.5)
P 		716.8
(-0.1)
P 		421.9
(-3)
P 		738.6
(0.1)
P 		874.8
(1.5)
P 		607
avr 790.2
(1.9) 		846.5
(3) 		578.2
(-2.3) 		541.5
(-3) 		711.1
(0.3) 		810.1
(2.3) 		305
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191403_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.832
Sequence Type Exemplar sequence
Representative Public ID T08G11.1 NCBI
Target Description T08G11.1 /REP_DB=WormBase Gene ID /WP=CE13443 /TR=Q94010 /GB=CAB02304.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nucleotide binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170907(11), NM_171842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170907 NCBI Caenorhabditis elegans T08G11.1b (T08G11.1) mRNA, complete cds. 11/11 None
NM_171842 NCBI Caenorhabditis elegans T08G11.1a (T08G11.1) mRNA, complete cds. 11/11 None
SNAP00000035561 ENSEMBL cdna:SNAP chromosome:CEL140:I:8913990:8924928:-1 11/11 None
GENEFINDER00000035568 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8913990:8924928:-1 11/11 None
T08G11.1b.3 ENSEMBL cdna:known chromosome:CEL140:I:8913399:8924929:-1 gene:T08G11.1 11/11 None
T08G11.1b.1 ENSEMBL cdna:known chromosome:CEL140:I:8913400:8924929:-1 gene:T08G11.1 11/11 None
T08G11.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:8913772:8924929:-1 gene:T08G11.1 11/11 None
T08G11.1a ENSEMBL cdna:known chromosome:CEL140:I:8913990:8924928:-1 gene:T08G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8913920-8924859(-) 99.18 100.0
Public Domain and Genome References
Ensembl T08G11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD27608 Hypothetical protein T08G11.1b [Caenorhabditis elegans] ref|NP_740899.1| T08G11.1b [Caenorhabditis elegans] 0.0
blast CAB02304 Hypothetical protein T08G11.1a [Caenorhabditis elegans] ref|NP_740900.1| T08G11.1a [Caenorhabditis elegans] 0.0
blast CAE66993 Hypothetical protein CBG12391 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009543 EMBL-EBI Protein of unknown function DUF1162 1.0E-126
Pfam IPR009543 EMBL-EBI Protein of unknown function DUF1162 2.8E-13
Pfam IPR009543 EMBL-EBI Protein of unknown function DUF1162 7.1E-106
Sequence
Target Sequence 
>C. ELEGANS:191403_S_AT
cattggtgtagttactcgtcctgtctcgggagttgtagactttgccagtggtaccatgaa
ttcggttcgtgcagttgctggaacaaatagagaagccggaccactcagaccaccccgtgt
actccgagaagacaagatcgtcaaaccatattcgagcggagacgcttatggattcaaagt
gttcaaagacacagatcgtggagagctcgctgaaactgatgaatttgtcacctacgcatc
tatcagcgaaaaaatggttctcattataacggaccgtcgattggttctcagcaaacgtac
tgatatgatgggtgtgtggcagacagagtggggatcagagtactgtaagatcaaagagcc
cgagtttattccaaatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGGTGTAGTTACTCGTCCTGTC 408 217 9135 Antisense
CTCGTCCTGTCTCGGGAGTTGTAGA 328 231 9149 Antisense
GTTGTAGACTTTGCCAGTGGTACCA 605 435 9166 Antisense
GAATTCGGTTCGTGCAGTTGCTGGA 530 323 9192 Antisense
AATAGAGAAGCCGGACCACTCAGAC 266 173 9220 Antisense
ACCCCGTGTACTCCGAGAAGACAAG 84 91 9246 Antisense
GACACAGATCGTGGAGAGCTCGCTG 79 367 9322 Antisense
TGAATTTGTCACCTACGCATCTATC 704 575 9354 Antisense
GGTTCTCATTATAACGGACCGTCGA 358 505 9390 Antisense
GACCGTCGATTGGTTCTCAGCAAAC 286 383 9406 Antisense
AGAGCCCGAGTTTATTCCAAATGGT 482 69 9489 Antisense
Sequence Source Affymetrix Proprietary Database