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[191400_at]

Description C17F4.4 /REP_DB=WormBase Gene ID /WP=CE28387 /GEN=srh-297 /TR=O16539 /GB=AAK72055.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 46      4grp_total > 04      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 32.4
(-2.1)
A 		8.6
(-3)
A 		42.4
(-1.7)
A 		159.6
(3)
P 		151
B 58.4
(-1)
A 		35.9
(-2.7)
A 		32
(-3)
A 		110.7
(3)
A 		79
C 41.6
(-0.9)
A 		18.8
(-2.1)
A 		2.4
(-3)
A 		115
(3)
A 		113
avr 44.1
(-1.7) 		21.1
(-3) 		25.6
(-2.7) 		128.4
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 41.5
(-1.6)
A 		32.3
(-3)
A 		59.9
(1.3)
A 		53.5
(0.3)
A 		70.7
(3)
A 		54.4
(0.5)
A 		38
B 23.9
(-3)
A 		58.1
(3)
A 		44.5
(0.6)
A 		31.5
(-1.7)
A 		33
(-1.4)
A 		52.6
(2)
A 		34
C 49.1
(-0.4)
A 		108.8
(3)
P 		20.5
(-2)
A 		11.2
(-2.5)
A 		1.9
(-3)
A 		65.7
(0.6)
A 		107
avr 38.2
(-1.9) 		66.4
(3) 		41.6
(-1.3) 		32.1
(-3) 		35.2
(-2.5) 		57.6
(1.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 11.8
(-0.2)
A 		1.9
(-3)
A 		11.1
(-0.4)
A 		23.4
(3)
P 		22
B 18.6
(1.1)
A 		8.9
(-2.4)
A 		7.4
(-3)
A 		23.6
(3)
A 		16
C 13.8
(1.2)
A 		5.4
(-1.5)
A 		0.8
(-3)
A 		19.4
(3)
A 		19
avr 14.7
(0.3) 		5.4
(-3) 		6.4
(-2.6) 		22.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 7.7
(-3)
A 		11.5
(-1.3)
A 		13
(-0.7)
A 		13.6
(-0.4)
A 		21.3
(3)
A 		13.2
(-0.6)
A 		14
B 8.3
(-3)
A 		19.3
(2.8)
A 		10.8
(-1.7)
A 		8.3
(-3)
A 		13.4
(-0.3)
A 		19.6
(3)
A 		11
C 18.2
(0.2)
A 		33.2
(3)
P 		5.2
(-2.2)
A 		2.3
(-2.7)
A 		0.6
(-3)
A 		22
(0.9)
A 		33
avr 11.4
(-1.5) 		21.3
(3) 		9.7
(-2.3) 		8.1
(-3) 		11.8
(-1.3) 		18.3
(1.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191400_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5126
Sequence Type Exemplar sequence
Representative Public ID C17F4.4 NCBI
Target Description C17F4.4 /REP_DB=WormBase Gene ID /WP=CE28387 /GEN=srh-297 /TR=O16539 /GB=AAK72055.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062084
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000021576 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3229278:3234808:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062083 6/11 Cross Hyb Matching Probes None
NM_062084 5/11 Cross Hyb Matching Probes None
SNAP00000021553 4/11 Cross Hyb Matching Probes None
C17F4.4 6/11 Cross Hyb Matching Probes A 
C17F4.8 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3230198-3232409(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31922 hypothetical protein C17F4.4 - Caenorhabditis elegans 1.0E-130
blast AAK72055 Serpentine receptor, class h protein 297 [Caenorhabditis elegans] ref|NP_494484.3| Serpentine Receptor, class H family member (srh-297) [Caenorhabditis elegans] 1.0E-124
blast AAK72056 Hypothetical protein C17F4.8 [Caenorhabditis elegans] ref|NP_494485.2| C17F4.8 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.7E-116
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 2.2E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021576 4 230-252,267-289,298-320,366-383
Sequence
Target Sequence 
>C. ELEGANS:191400_AT
gaagctcagttctacctgttggaggagttggtcgatctgtgtcatagaaaaatcaataca
aaaattcgtgtactaataagtggcactgaaaaaatagagttctatacaaaaaacgacaag
ccacgattgttgataaagtatcctgaaaagaatctagatgaatcgcccattttggacatc
gactgggggagtttaatggaaaagtatagagatcaatttcacattgctttcgcaccacaa
aacaactgttccttgagcgcaaattgtcaattcaagtcagtcaagtcaagtatctttctg
agtattggggatgtatcaaatgattgtgagcaatttattgataattttttaaagaaacat
tttccaattcacattttcggaggttattgtatcctattaaaaactcctaaaattatgaaa
tccgttaagtgggctctgttcaaccttcacttctggtcttccttcttagacatttccatt
agcctgctcgcccagcctttcctatgtgctccggtatttgctggatatcaattagggatt
ttgagctggattggtgtacccacagacatctcggaattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCAGTTCTACCTGTTGGAGG 275 343 442 Antisense
GGAGGAGTTGGTCGATCTGTGTCAT 103 517 462 Antisense
GAATCGCCCATTTTGGACATCGACT 460 329 601 Antisense
CAATTTCACATTGCTTTCGCACCAC 247 181 655 Antisense
AACAACTGTTCCTTGAGCGCAAATT 526 133 682 Antisense
TAAGTGGGCTCTGTTCAACCTTCAC 547 637 867 Antisense
ACTTCTGGTCTTCCTTCTTAGACAT 534 103 890 Antisense
CTTAGACATTTCCATTAGCCTGCTC 643 221 906 Antisense
TCCTATGTGCTCCGGTATTTGCTGG 237 593 941 Antisense
GAGCTGGATTGGTGTACCCACAGAC 311 387 984 Antisense
GTACCCACAGACATCTCGGAATTGA 328 459 997 Antisense
Sequence Source Affymetrix Proprietary Database