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[191399_s_at] C2HC type zinc finger protein

Description F52F12.6 /REP_DB=WormBase Gene ID /WP=CE24995 /TR=O02274 /GB=CAB05737.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=transcription factor like
Cluster 6grp_total > 48      4grp_total > 31      6grp_cgc > 17      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 72.9
(3)
A 		18.4
(-3)
A 		40.1
(-0.6)
A 		45.5
(-0)
A 		55
B 13.4
(-3)
A 		14.6
(-1.3)
A 		17.6
(3)
A 		14.3
(-1.7)
A 		4
C 13.1
(1.5)
A 		15.6
(3)
A 		5.9
(-3)
A 		15.5
(2.9)
A 		10
avr 33.1
(3) 		16.2
(-3) 		21.2
(-1.2) 		25.1
(0.2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 85.1
(0.8)
A 		42.4
(-1.2)
A 		8.7
(-2.8)
A 		3.6
(-3)
A 		12.1
(-2.6)
A 		133.6
(3)
A 		130
B 77.7
(1.3)
A 		30
(-1.5)
A 		13.5
(-2.5)
A 		9.3
(-2.7)
A 		4.7
(-3)
A 		106.6
(3)
A 		102
C 51.2
(3)
A 		26.8
(-0.1)
A 		30.8
(0.4)
A 		4.7
(-3)
A 		8.2
(-2.5)
A 		21.8
(-0.8)
A 		47
avr 71.3
(1.8) 		33.1
(-1) 		17.7
(-2.1) 		5.9
(-3) 		8.3
(-2.8) 		87.3
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.6
(3)
A 		4
(-3)
A 		10.5
(-1.3)
A 		6.7
(-2.3)
A 		23
B 4.3
(3)
A 		3.6
(-0.2)
A 		4.1
(2.1)
A 		3
(-3)
A 		1
C 4.3
(2.5)
A 		4.5
(3)
A 		2.1
(-3)
A 		2.6
(-1.8)
A 		2
avr 11.7
(3) 		4
(-3) 		5.6
(-1.8) 		4.1
(-2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 15.7
(-0.2)
A 		15.1
(-0.3)
A 		1.9
(-2.8)
A 		0.9
(-3)
A 		3.7
(-2.5)
A 		32.5
(3)
A 		32
B 27
(1)
A 		10
(-1.7)
A 		3.3
(-2.8)
A 		2.5
(-2.9)
A 		1.9
(-3)
A 		39.7
(3)
A 		38
C 19
(3)
A 		8.2
(-0.6)
A 		7.8
(-0.7)
A 		0.9
(-3)
A 		2.6
(-2.4)
A 		7.3
(-0.9)
A 		18
avr 20.6
(1.6) 		11.1
(-0.7) 		4.3
(-2.3) 		1.4
(-3) 		2.7
(-2.7) 		26.5
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191399_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1559
Sequence Type Exemplar sequence
Representative Public ID F52F12.6 NCBI
Target Description F52F12.6 /REP_DB=WormBase Gene ID /WP=CE24995 /TR=O02274 /GB=CAB05737.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=transcription factor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060221 NCBI Caenorhabditis elegans F52F12.6 (F52F12.6) mRNA, complete cds. 11/11 A 
SNAP00000038778 ENSEMBL cdna:SNAP chromosome:CEL140:I:9912517:9916299:-1 11/11 None
GENEFINDER00000038791 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9912517:9918648:-1 11/11 None
F52F12.6 ENSEMBL cdna:known chromosome:CEL140:I:9911050:9918666:-1 gene:F52F12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9912447-9918579(-) 100.0 100.0
Public Domain and Genome References
Gene Title C2HC type zinc finger protein
Gene Symbol ekl-2
Ensembl F52F12.6
Entrez Gene 172845 Entrez gene
SwissProt O02274 EMBL-EBI
WormBase CE24995 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05737 Hypothetical protein F52F12.6 [Caenorhabditis elegans] ref|NP_492622.1| F52F12.6 [Caenorhabditis elegans] 0.0
blast AAB40716 C2-HC type zinc finger protein C.e-MyT1 [Caenorhabditis elegans] 0.0
blast CAE60275 Hypothetical protein CBG03854 [Caenorhabditis briggsae] 1.0E-146
blast CAE60275 Hypothetical protein CBG03854 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 7.4E-16
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 1.8E-15
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 7.4E-16
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 1.8E-15
Sequence
Target Sequence 
>C. ELEGANS:191399_S_AT
ggttgtccaattgcccatcaggaaaagcttgcacggaagggaattaagacaacaccacaa
cgcacgaaaactccaattaagggaatcagtatttctgatgaatgtccacttgacttgaca
ctttctggacttccagctggattgtcagctcagcaattgttggctgcagcacaagcagga
ctcattccatcaagtcaaatgatggatgctctcttccaacaattctctcaaacacaacca
cttgctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGTCCAATTGCCCATCAGGAAA 48 505 1012 Antisense
GCCCATCAGGAAAAGCTTGCACGGA 148 285 1024 Antisense
GGGAATTAAGACAACACCACAACGC 182 493 1050 Antisense
ACCACAACGCACGAAAACTCCAATT 379 85 1065 Antisense
GTCCACTTGACTTGACACTTTCTGG 580 475 1115 Antisense
GGACTTCCAGCTGGATTGTCAGCTC 205 525 1138 Antisense
GCAATTGTTGGCTGCAGCACAAGCA 503 323 1164 Antisense
GCACAAGCAGGACTCATTCCATCAA 490 317 1180 Antisense
AATGATGGATGCTCTCTTCCAACAA 572 163 1209 Antisense
CTCTTCCAACAATTCTCTCAAACAC 87 231 1222 Antisense
CTCTCAAACACAACCACTTGCTACA 688 229 1236 Antisense
Sequence Source Affymetrix Proprietary Database