[Home] | [Total List]

[191398_at] 7TM chemoreceptor, srh family

Description F37B4.4 /REP_DB=WormBase Gene ID /WP=CE24957 /GEN=srh-272 /TR=O45163 /GB=AAK18947.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 51      4grp_total > 01      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 26.1
(-0.1)
A 		8.2
(-3)
A 		37
(1.7)
A 		44.7
(3)
A 		37
B 30.2
(-0.8)
A 		30.4
(-0.7)
A 		42.1
(3)
A 		23.1
(-3)
A 		19
C 41.2
(-0.5)
A 		47
(0.1)
A 		16.8
(-3)
A 		74.5
(3)
A 		58
avr 32.5
(-1.7) 		28.5
(-3) 		32
(-1.9) 		47.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 36.2
(0.7)
A 		5.9
(-3)
A 		50.6
(2.4)
A 		55.7
(3)
A 		23.8
(-0.8)
A 		20
(-1.3)
A 		50
B 31.2
(-0.6)
A 		35.5
(0)
A 		57.9
(3)
A 		55.6
(2.7)
A 		12.8
(-3)
A 		18
(-2.3)
A 		45
C 21.1
(-0.9)
A 		19.2
(-1.1)
A 		49.7
(3)
A 		5.8
(-2.9)
A 		6
(-2.9)
A 		5.3
(-3)
A 		44
avr 29.5
(-0.6) 		20.2
(-2.1) 		52.7
(3) 		39
(0.9) 		14.2
(-3) 		14.4
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.5
(2.8)
A 		1.8
(-3)
A 		9.7
(3)
A 		6.5
(0.6)
A 		8
B 9.6
(2.8)
A 		7.5
(0.2)
A 		9.8
(3)
A 		4.9
(-3)
A 		5
C 13.6
(3)
A 		13.5
(2.9)
A 		5.8
(-3)
A 		12.6
(2.2)
A 		8
avr 10.9
(3) 		7.6
(-3) 		8.4
(-1.5) 		8
(-2.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.7
(-0.7)
A 		2.1
(-3)
A 		11
(1.5)
A 		14.1
(3)
A 		7.2
(-0.5)
A 		4.9
(-1.6)
A 		12
B 10.9
(0.6)
A 		11.8
(1.2)
A 		14.1
(2.6)
A 		14.7
(3)
A 		5.2
(-3)
A 		6.7
(-2.1)
A 		10
C 7.8
(0.5)
A 		5.9
(-0.5)
A 		12.6
(3)
A 		1.2
(-3)
A 		2
(-2.6)
A 		1.8
(-2.7)
A 		11
avr 8.5
(-0) 		6.6
(-1.4) 		12.6
(3) 		10
(1.1) 		4.8
(-2.8) 		4.5
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15081
Sequence Type Exemplar sequence
Representative Public ID F37B4.4 NCBI
Target Description F37B4.4 /REP_DB=WormBase Gene ID /WP=CE24957 /GEN=srh-272 /TR=O45163 /GB=AAK18947.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071375(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071375 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-272) (srh-272) mRNA, complete cds. 9/11 None
F37B4.4 ENSEMBL cdna:known chromosome:CEL140:V:2863160:2864828:1 gene:F37B4.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2863159-2864828(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-272
Ensembl F37B4.4
Entrez Gene 191897 Entrez gene
SwissProt O45163 EMBL-EBI
WormBase CE35969 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18947 Serpentine receptor, class h protein 272 [Caenorhabditis elegans] ref|NP_503776.2| Serpentine Receptor, class H family member (srh-272) [Caenorhabditis elegans] 1.0E-153
blast NP_503718 Serpentine Receptor, class H family member (srh-271) [Caenorhabditis elegans] gb|AAF60378.2| Serpentine receptor, class h protein 271 [Caenorhabditis elegans] 6.0E-93
blast F88978 protein F37B4.4 [imported] - Caenorhabditis elegans 6.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503776.2 7 15-34,54-76,91-113,134-153,191-213,234-256,271-290
F37B4.4 7 15-34,54-76,91-113,134-153,191-213,234-256,271-290
Sequence
Target Sequence 
>C. ELEGANS:191398_AT
ggatagcttctggcgatattttcggtttccatttttcctattcaatcattttatcgcagt
tttattcttcgttcctccatatctaagcattccaaatcaaaacatggctctagatcaaat
atttcaagacctcgctccagatcttcccgagtggattaaaattggaccaatttttgtgct
aacaacggatattgcgtactcctttgtttcaatcttattaatcgcagtattcataattgc
tgaaatactatttttcatttttcttatttggctaaatatgcagtttttaacgaaaacgat
gagcttatcaaaagcgactttgcgtttgcaacggaaatttctaaacgcaattcatattca
gttgtacacaccactagtggccttgataattccattgctatattttgcgtactctgtata
tttcgacagttacaaccaagcttacaataatatttccttcattataatatcctgtcatgg
cctcatatccaccttaatcatgcttttcattcacaagccttatcgagaaatttgccgatc
tattttctgtggttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATAGCTTCTGGCGATATTTTCGG 368 511 381 Antisense
TATCGCAGTTTTATTCTTCGTTCCT 354 657 432 Antisense
TTCGTTCCTCCATATCTAAGCATTC 23 695 448 Antisense
TCAAATATTTCAAGACCTCGCTCCA 400 629 495 Antisense
GCTCCAGATCTTCCCGAGTGGATTA 579 297 514 Antisense
GATATTGCGTACTCCTTTGTTTCAA 641 425 568 Antisense
CAGTTGTACACACCACTAGTGGCCT 461 205 739 Antisense
CATTGCTATATTTTGCGTACTCTGT 529 217 773 Antisense
TAATATCCTGTCATGGCCTCATATC 129 635 845 Antisense
GCCTCATATCCACCTTAATCATGCT 515 281 860 Antisense
TGCCGATCTATTTTCTGTGGTTTTC 231 585 913 Antisense
Sequence Source Affymetrix Proprietary Database