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[191397_at] 7TM chemoreceptor, srh family

Description C03G6.9 /REP_DB=WormBase Gene ID /WP=CE07883 /GEN=srh-244 /TR=O01447 /GB=AAB52309.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 74      4grp_total > 0      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 19
(-2.4)
A 		10.9
(-3)
A 		57.7
(0.2)
A 		98.7
(3)
A 		88
B 8.7
(-3)
A 		11.7
(-2.7)
A 		67.5
(3)
A 		12.7
(-2.6)
A 		59
C 42.9
(3)
A 		14.5
(-2.7)
A 		13.1
(-3)
A 		33.2
(1)
A 		30
avr 23.5
(-1.1) 		12.4
(-3) 		46.1
(2.6) 		48.2
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 11.5
(-1.8)
A 		8.8
(-2.5)
A 		21.5
(0.9)
A 		6.9
(-3)
A 		13.7
(-1.2)
A 		29.1
(3)
A 		22
B 8.2
(-2.8)
A 		7.3
(-3)
A 		27.3
(0.9)
A 		11.7
(-2.1)
A 		7.3
(-3)
A 		38.2
(3)
A 		31
C 7.2
(-2.7)
A 		27
(-0.6)
A 		9.4
(-2.5)
A 		61
(3)
A 		6.2
(-2.8)
A 		4.5
(-3)
A 		57
avr 9
(-3) 		14.4
(-1.1) 		19.4
(0.6) 		26.5
(3) 		9.1
(-3) 		23.9
(2.1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.9
(-0.9)
A 		2.4
(-3)
A 		15.1
(3)
A 		14.4
(2.7)
A 		13
B 2.8
(-3)
A 		2.9
(-2.9)
A 		15.6
(3)
A 		2.7
(-3)
A 		13
C 14.2
(3)
A 		4.2
(-3)
A 		4.6
(-2.8)
A 		5.6
(-2.2)
A 		10
avr 8
(0.3) 		3.2
(-3) 		11.8
(3) 		7.6
(0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.1
(-2.6)
A 		3.1
(-1.4)
A 		4.7
(0.3)
A 		1.7
(-3)
A 		4.1
(-0.3)
A 		7.1
(3)
A 		5
B 2.9
(-2.7)
A 		2.4
(-3)
A 		6.6
(-0.9)
A 		3.1
(-2.6)
A 		3
(-2.7)
A 		14.2
(3)
A 		12
C 2.7
(-2.3)
A 		8.2
(0.7)
A 		2.4
(-2.5)
A 		12.3
(3)
A 		2
(-2.7)
A 		1.5
(-3)
A 		11
avr 2.6
(-3) 		4.6
(-0.6) 		4.6
(-0.6) 		5.7
(0.7) 		3
(-2.5) 		7.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11948
Sequence Type Exemplar sequence
Representative Public ID C03G6.9 NCBI
Target Description C03G6.9 /REP_DB=WormBase Gene ID /WP=CE07883 /GEN=srh-244 /TR=O01447 /GB=AAB52309.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072471 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-244) (srh-244) mRNA, complete cds. 11/11 None
GENEFINDER00000031573 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7347101:7350728:1 10/11 None
C03G6.9 ENSEMBL cdna:known chromosome:CEL140:V:7346654:7347827:1 gene:C03G6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7346654-7347828(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-244
Ensembl C03G6.9
Entrez Gene 182171 Entrez gene
SwissProt O01447 EMBL-EBI
WormBase CE07883 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52309 Serpentine receptor, class h protein 244 [Caenorhabditis elegans] ref|NP_504872.1| Serpentine Receptor, class H family member (srh-244) [Caenorhabditis elegans] 1.0E-175
blast AAB52308 Hypothetical protein C03G6.8 [Caenorhabditis elegans] ref|NP_504873.1| C03G6.8 [Caenorhabditis elegans] 1.0E-172
blast AAK18946 Serpentine receptor, class h protein 243 [Caenorhabditis elegans] ref|NP_503779.1| Serpentine Receptor, class H family member (srh-243) [Caenorhabditis elegans] 1.0E-134
blast AAB52309 Serpentine receptor, class h protein 244 [Caenorhabditis elegans] ref|NP_504872.1| Serpentine Receptor, class H family member (srh-244) [Caenorhabditis elegans] 4.0E-80
blast AAK18949 Serpentine receptor, class h protein 241 [Caenorhabditis elegans] ref|NP_503778.1| Serpentine Receptor, class H family member (srh-241) [Caenorhabditis elegans] 2.0E-69
blast AAB52310 Hypothetical protein C03G6.10 [Caenorhabditis elegans] ref|NP_504871.1| C03G6.10 [Caenorhabditis elegans] 3.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.5E-80
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.4E-42
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504872.1 7 20-42,63-82,97-119,139-158,196-218,249-271,281-298
C03G6.9 7 20-42,63-82,97-119,139-158,196-218,249-271,281-298
GENEFINDER00000031573 3 30-49,87-109,141-163
Sequence
Target Sequence 
>C. ELEGANS:191397_AT
ggctgtcagaaaaccttaccttatttttgtgtacatctcagtaccattcatatttctacc
gcctttcctaattattcccgagcaagaaaatgctcggagtttcattttggataaacttcc
gtgtttgccacatttttcacttaatgatgaagaattttttgtgctgagcatcaatccaac
tgtgccgttgctttgtattgcattcgctattttatttctagcagttccaattttaacatt
cttctcatttacactttatcatttgttaaccagaaaaaagttaatgactctttctgcaaa
cacattatcaatccatgaaaaattcctcaagtcagtaagcattcagtcactatccacagc
tatcatcgtcctgataccgcttttaacctttattacagttatgattttttggtatcacaa
ccaaaaactgaacaatttgggatacttggtcctgtcactacatggcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGTCAGAAAACCTTACCTTATT 94 537 411 Antisense
AGTACCATTCATATTTCTACCGCCT 4 61 450 Antisense
CCTTTCCTAATTATTCCCGAGCAAG 203 259 472 Antisense
ACTTCCGTGTTTGCCACATTTTTCA 465 103 525 Antisense
GCATCAATCCAACTGTGCCGTTGCT 432 309 578 Antisense
GCCGTTGCTTTGTATTGCATTCGCT 687 283 594 Antisense
AACATTCTTCTCATTTACACTTTAT 451 137 645 Antisense
GACTCTTTCTGCAAACACATTATCA 91 375 696 Antisense
TTCAGTCACTATCCACAGCTATCAT 649 687 752 Antisense
TCCTGATACCGCTTTTAACCTTTAT 190 593 779 Antisense
CTTGGTCCTGTCACTACATGGCAGT 162 219 855 Antisense
Sequence Source Affymetrix Proprietary Database