[Home] | [Total List]

[191396_s_at] phospholipase D

Description C04G6.3 /REP_DB=WormBase Gene ID /WP=CE27651 /GEN=pld-1 /TR=Q17637 /GB=AAA98011.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=phospholipase D
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 20      6grp_total > 16      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 747
1 2 3 4 range
A 1096.3
(3)
P 		596.5
(-1)
P 		647.3
(-0.6)
P 		355.7
(-3)
P 		741
B 1062
(3)
P 		613.6
(-1.2)
P 		528.6
(-2)
P 		423.2
(-3)
P 		639
C 1013.8
(3)
P 		803
(1.1)
P 		700.4
(0.2)
P 		349.3
(-3)
P 		665
avr 1057.4
(3) 		671
(-0.4) 		625.4
(-0.8) 		376.1
(-3) 		681

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 889
1 2 3 4 5 6 range
A 1465.9
(3)
P 		1301.1
(1.7)
P 		688.5
(-3)
P 		792.3
(-2.2)
P 		880.9
(-1.5)
P 		821.5
(-2)
P 		777
B 1422.9
(3)
P 		1164.4
(1.1)
P 		605.1
(-3)
P 		898.5
(-0.8)
P 		781.8
(-1.7)
P 		781.1
(-1.7)
P 		818
C 1434.2
(3)
P 		1180.7
(1.2)
P 		1062.9
(0.4)
P 		808.7
(-1.4)
P 		776.7
(-1.6)
P 		577.3
(-3)
P 		857
avr 1441
(3) 		1215.4
(1.1) 		785.5
(-2.5) 		833.2
(-2.1) 		813.1
(-2.3) 		726.6
(-3) 		714
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 399.1
(3)
P 		129.5
(-1.7)
P 		169.2
(-1)
P 		52.1
(-3)
P 		347
B 338.7
(3)
P 		151.6
(-1.5)
P 		122.5
(-2.2)
P 		90.2
(-3)
P 		249
C 335.6
(3)
P 		230.9
(0.7)
P 		244.1
(1)
P 		58.9
(-3)
P 		277
avr 357.8
(3) 		170.7
(-0.9) 		178.6
(-0.7) 		67.1
(-3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 270.2
(-0.7)
P 		462.7
(3)
P 		149.9
(-3)
P 		201
(-2)
P 		265.8
(-0.8)
P 		200
(-2)
P 		313
B 495.1
(3)
P 		387.6
(1.1)
P 		146.9
(-3)
P 		238
(-1.4)
P 		317.6
(-0.1)
P 		291.3
(-0.5)
P 		348
C 531.6
(3)
P 		360.3
(0.2)
P 		270.5
(-1.2)
P 		162.6
(-3)
P 		251.3
(-1.6)
P 		193.3
(-2.5)
P 		369
avr 432.3
(3) 		403.5
(2.3) 		189.1
(-3) 		200.5
(-2.7) 		278.2
(-0.8) 		228.2
(-2) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191396_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5751
Sequence Type Exemplar sequence
Representative Public ID C04G6.3 NCBI
Target Description C04G6.3 /REP_DB=WormBase Gene ID /WP=CE27651 /GEN=pld-1 /TR=Q17637 /GB=AAA98011.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=phospholipase D
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062538(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062538 NCBI Caenorhabditis elegans PhosphoLipase D family member (pld-1) (pld-1) mRNA, complete cds. 11/11 A 
SNAP00000008306 ENSEMBL cdna:SNAP chromosome:CEL140:II:5084206:5091619:-1 11/11 None
GENEFINDER00000008320 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5084206:5091855:-1 11/11 None
C04G6.3.1 ENSEMBL cdna:known chromosome:CEL140:II:5083843:5091619:-1 gene:C04G6.3 11/11 None
C04G6.3.2 ENSEMBL cdna:known chromosome:CEL140:II:5083932:5091673:-1 gene:C04G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5084203-5091380(-) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase D
Gene Symbol pld-1
Ensembl C04G6.3
Entrez Gene 173876 Entrez gene
SwissProt Q17637 EMBL-EBI
WormBase CE27651 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258430_AT phospholipase D zeta1 / PLDzeta1 (PLDP1) at
ATH1-121501:258426_AT phospholipase D zeta1 / PLDzeta1 (PLDP1) at
CANINE_2:CFAAFFX.23480.1.S1_S_AT similar to Phospholipase D1 (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D1) (hPLD1) cfa
DROSOPHILA_2:1627315_S_AT Phospholipase D dm
DROSGENOME1:152107_AT Phospholipase D dm
CHICKEN:GGAAFFX.22854.1.S1_S_AT similar to Phospholipase D1 (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D1) (hPLD1) gga
CHICKEN:GGAAFFX.5832.1.S1_S_AT similar to Phospholipase D1 (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D1) (hPLD1) gga
HG-U133_PLUS_2:232530_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133B:232530_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133B:226636_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133_PLUS_2:226636_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133_PLUS_2:215724_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133A_2:215724_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133A:215724_AT phospholipase D1, phophatidylcholine-specific hs
HG-U95AV2:177_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133A:177_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133_PLUS_2:177_AT phospholipase D1, phophatidylcholine-specific hs
HG-FOCUS:177_AT phospholipase D1, phophatidylcholine-specific hs
HC-G110:177_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133A_2:177_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133_PLUS_2:205203_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133A:205203_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133A_2:205203_AT phospholipase D1, phophatidylcholine-specific hs
HUGENEFL:U38545_AT phospholipase D1, phophatidylcholine-specific hs
U133_X3P:G4505872_3P_S_AT phospholipase D1, phophatidylcholine-specific hs
U133_X3P:HS2.193001.1.S1_3P_S_AT phospholipase D1, phophatidylcholine-specific hs
U133_X3P:HS.93837.2.A1_3P_AT phospholipase D1, phophatidylcholine-specific hs
U133_X3P:HS.82587.1.S1_3P_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133_PLUS_2:1557126_A_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133A_2:215723_S_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133_PLUS_2:215723_S_AT phospholipase D1, phophatidylcholine-specific hs
HG-U133A:215723_S_AT phospholipase D1, phophatidylcholine-specific hs
HG-U95E:89866_AT phospholipase D1, phophatidylcholine-specific hs
HG-U95B:59475_I_AT Phospholipase D1, phophatidylcholine-specific hs
HG-U95B:59477_R_AT Phospholipase D1, phophatidylcholine-specific hs
HG-U95E:80051_AT Phospholipase D1, phophatidylcholine-specific hs
MG-U74AV2:101628_G_AT phospholipase D1 mm
MOUSE430A_2:1437112_AT phospholipase D1 mm
MOE430A:1437112_AT phospholipase D1 mm
MOUSE430_2:1437112_AT phospholipase D1 mm
MU11KSUBA:U87868_AT phospholipase D1 mm
MG-U74AV2:92475_G_AT phospholipase D1 mm
MG-U74AV2:92474_AT phospholipase D1 mm
MG-U74AV2:101627_AT phospholipase D1 mm
MG-U74BV2:110715_AT phospholipase D1 mm
MOE430A:1437113_S_AT phospholipase D1 mm
MOUSE430A_2:1437113_S_AT phospholipase D1 mm
MOUSE430_2:1437113_S_AT phospholipase D1 mm
MOE430A:1425739_AT phospholipase D1 mm
MOUSE430A_2:1425739_AT phospholipase D1 mm
MOUSE430_2:1425739_AT phospholipase D1 mm
MU19KSUBC:TC37724_AT Phosphatidylcholine-specific phospholipase D1b (mPLD1) mm
RN-U34:U88986_S_AT phospholipase D1 rn
RG-U34A:U88986_S_AT phospholipase D1 rn
RN-U34:AF017251_AT phospholipase D1 rn
RG-U34A:AF017251_AT phospholipase D1 rn
RG-U34A:AB000778_S_AT phospholipase D1 rn
RG-U34A:U69550_AT phospholipase D1 rn
RAE230A:1370679_AT phospholipase D1 rn
RAT230_2:1370679_AT phospholipase D1 rn
RAE230A:1370531_A_AT phospholipase D1 rn
RAT230_2:1370531_A_AT phospholipase D1 rn
RAE230A:1370532_AT phospholipase D1 rn
RAT230_2:1370532_AT phospholipase D1 rn
RAE230A:1370529_A_AT phospholipase D1 rn
RAT230_2:1370529_A_AT phospholipase D1 rn
RAE230A:1370530_A_AT phospholipase D1 rn
RAT230_2:1370530_A_AT phospholipase D1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98011 Phospholipase d protein 1 [Caenorhabditis elegans] ref|NP_494939.1| PhosphoLipase D family member (pld-1) [Caenorhabditis elegans] dbj|BAA97571.1| phospholipase D [Caenorhabditis elegans] 0.0
blast CAE59039 Hypothetical protein CBG02320 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 1.1E-8
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 4.1E-8
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.5E-8
Pfam IPR001683 EMBL-EBI Phox-like 3.3E-23
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 1.1E-8
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 4.1E-8
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.5E-8
Pfam IPR001683 EMBL-EBI Phox-like 3.3E-23
Sequence
Target Sequence 
>C. ELEGANS:191396_S_AT
gtatctgagctcgtctacattcattgtaaattgctcatcgtcgatgatgagcatgttatc
attggatcagcaaatattaatgatagatcacagtgtggaaatcgtgactctgaagtatgc
tgtgtgtacactgacgtcgtcaaagaacgttcggttatggatggaaaaccattcgaggct
ggacgatttgcaaagagcctacggatgcaatgcatgagggaacatcttggcctacttccc
gactcccgccggaaagcgaaattcccgtatgcagtgtcatgcgatgatcctgtcgccgat
agtttctttgttgatgtatggcaatcaactgccaagagtaatggtcagatttatgaagag
gttttccgctcctaccccaccgatttcgtggaaacttttgaagagttccaaaaatggaca
tcacagattccaatgtccgaatattctccacaacaagctgaggaaagagttcgagatcta
aaaggtgtcctcgtcgatttcccactcaacttcctttgcaaagcagttctgactccagga
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCTGAGCTCGTCTACATTCATT 232 455 3658 Antisense
GCTGTGTGTACACTGACGTCGTCAA 202 295 3776 Antisense
ATGAGGGAACATCTTGGCCTACTTC 514 45 3871 Antisense
AGCGAAATTCCCGTATGCAGTGTCA 196 83 3912 Antisense
GTGTCATGCGATGATCCTGTCGCCG 705 485 3931 Antisense
CTGTCGCCGATAGTTTCTTTGTTGA 50 241 3947 Antisense
TATGAAGAGGTTTTCCGCTCCTACC 475 655 4009 Antisense
GTCCGAATATTCTCCACAACAAGCT 137 475 4092 Antisense
TCTAAAAGGTGTCCTCGTCGATTTC 113 587 4134 Antisense
CCACTCAACTTCCTTTGCAAAGCAG 72 275 4159 Antisense
GCAAAGCAGTTCTGACTCCAGGAAT 149 319 4175 Antisense
Sequence Source Affymetrix Proprietary Database