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[191392_at] G-protein coupled receptor

Description F53A9.5 /REP_DB=WormBase Gene ID /WP=CE02765 /TR=Q20686 /GB=AAC46560.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 20      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 6.9
(-3)
A 		12.4
(0.6)
A 		16
(3)
A 		8.4
(-2)
A 		9
B 35
(3)
A 		5.1
(-3)
A 		26
(1.2)
A 		15.2
(-1)
A 		30
C 45.2
(3)
A 		5.6
(-2.8)
A 		4
(-3)
A 		34.8
(1.5)
A 		41
avr 29
(3) 		7.7
(-3) 		15.3
(-0.9) 		19.5
(0.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 5.4
(-2.7)
A 		2.7
(-3)
A 		59
(3)
A 		4
(-2.9)
A 		31.4
(0.1)
A 		13.5
(-1.8)
A 		56
B 18.2
(-1)
A 		49.1
(3)
A 		22.7
(-0.4)
A 		27.3
(0.2)
A 		15.2
(-1.4)
A 		2.6
(-3)
A 		47
C 12.9
(-1.6)
A 		46.3
(3)
A 		5.3
(-2.7)
A 		26.3
(0.2)
A 		4.2
(-2.8)
A 		2.9
(-3)
A 		43
avr 12.2
(-1.7) 		32.7
(3) 		29
(2.2) 		19.2
(-0.1) 		16.9
(-0.6) 		6.3
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.5
(-0.4)
A 		2.7
(0)
A 		4.2
(3)
A 		1.2
(-3)
A 		3
B 11.2
(3)
A 		1.3
(-3)
A 		6
(-0.2)
A 		3.2
(-1.8)
A 		10
C 14.9
(3)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		5.9
(-1)
A 		14
avr 9.5
(3) 		1.9
(-3) 		3.9
(-1.4) 		3.4
(-1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1
(-3)
A 		1
(-3)
A 		12.8
(3)
A 		1
(-3)
A 		9.5
(1.3)
A 		3.3
(-1.8)
A 		12
B 6.3
(-0.9)
A 		16.4
(3)
A 		5.5
(-1.2)
A 		7.2
(-0.6)
A 		6.2
(-1)
A 		1
(-3)
A 		15
C 4.8
(-1.3)
A 		14.1
(3)
A 		1.4
(-2.8)
A 		5.3
(-1)
A 		1.3
(-2.9)
A 		1
(-3)
A 		13
avr 4
(-1.5) 		10.5
(3) 		6.6
(0.3) 		4.5
(-1.1) 		5.7
(-0.3) 		1.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16057
Sequence Type Exemplar sequence
Representative Public ID F53A9.5 NCBI
Target Description F53A9.5 /REP_DB=WormBase Gene ID /WP=CE02765 /TR=Q20686 /GB=AAC46560.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077069 NCBI Caenorhabditis elegans F53A9.5 (F53A9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000001083 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8697755:8702760:1 10/11 None
F53A9.5 ENSEMBL cdna:known chromosome:CEL140:X:8698358:8699561:1 gene:F53A9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8698356-8699560(+) 90.75 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl F53A9.5
Entrez Gene 186144 Entrez gene
SwissProt Q20686 EMBL-EBI
WormBase CE02765 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46560 Hypothetical protein F53A9.5 [Caenorhabditis elegans] ref|NP_509470.1| F53A9.5 [Caenorhabditis elegans] 3.0E-76
blast AAC46560 Hypothetical protein F53A9.5 [Caenorhabditis elegans] ref|NP_509470.1| F53A9.5 [Caenorhabditis elegans] 2.0E-47
blast CAE69341 Hypothetical protein CBG15419 [Caenorhabditis briggsae] 4.0E-47
blast CAE69341 Hypothetical protein CBG15419 [Caenorhabditis briggsae] 2.0E-45
blast AAC02600 Hypothetical protein F57H12.4 [Caenorhabditis elegans] ref|NP_501332.1| F57H12.4 [Caenorhabditis elegans] 4.0E-45
blast AAC02600 Hypothetical protein F57H12.4 [Caenorhabditis elegans] ref|NP_501332.1| F57H12.4 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.7E-6
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.1E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509470.1 2 19-41,112-134
F53A9.5 2 19-41,112-134
GENEFINDER00000001083 7 47-69,78-100,125-147,168-190,216-238,267-289,304-326
Sequence
Target Sequence 
>C. ELEGANS:191392_AT
atgtttctgccttttttgtcgaataaagaaggagtcttgtccaacaaatcatcactcaac
gtatatcttgccggattatcggttttcgatcttatcctgctttcattcagtgctctgatc
ttttcacctctccaaggttgcgttttgcagggtcacggggacaccgcggtttgtcatttc
ttctggagatcaactccttggacgttacccatatcaaatatcgcacaatgtggtagtgtc
tggacatgtgttgcagtgacggtggatcgatttcttgctgttaactatccgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTCTGCCTTTTTTGTCGAATA 575 47 13 Antisense
ATCACTCAACGTATATCTTGCCGGA 119 27 63 Antisense
TATCGGTTTTCGATCTTATCCTGCT 666 657 89 Antisense
TTATCCTGCTTTCATTCAGTGCTCT 185 681 104 Antisense
ATTCAGTGCTCTGATCTTTTCACCT 693 11 117 Antisense
ACCTCTCCAAGGTTGCGTTTTGCAG 23 89 138 Antisense
TTTTGCAGGGTCACGGGGACACCGC 559 669 155 Antisense
GAGATCAACTCCTTGGACGTTACCC 635 395 198 Antisense
GGACATGTGTTGCAGTGACGGTGGA 529 525 254 Antisense
GTGACGGTGGATCGATTTCTTGCTG 643 481 268 Antisense
TTTCTTGCTGTTAACTATCCGCTTC 261 671 283 Antisense
Sequence Source Affymetrix Proprietary Database