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[191391_at] 7TM chemoreceptor, str family

Description C07G3.3 /REP_DB=WormBase Gene ID /WP=CE07994 /GEN=str-227 /TR=O16326 /GB=AAB65377.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 66      4grp_total > 10      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 66.2
(-1.6)
A 		79
(-1.3)
A 		12.2
(-3)
A 		246.5
(3)
P 		234
B 24.4
(-3)
A 		62.9
(-1.7)
A 		42.9
(-2.4)
A 		206.9
(3)
P 		183
C 51.2
(-2.6)
A 		82.5
(-1.7)
A 		39.3
(-3)
A 		238.7
(3)
P 		199
avr 47.3
(-2.5) 		74.8
(-1.7) 		31.5
(-3) 		230.7
(3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 28.4
(-2.3)
A 		48.3
(-0.3)
A 		58.8
(0.7)
A 		21.5
(-3)
A 		48.2
(-0.3)
A 		81.2
(3)
A 		60
B 49.2
(-0.5)
A 		61
(1)
A 		77.2
(3)
A 		28.9
(-3)
A 		45
(-1)
A 		56.2
(0.4)
A 		48
C 30.5
(-2.6)
A 		36.9
(-1.4)
A 		28.5
(-3)
A 		39.5
(-0.9)
A 		50.3
(1.2)
A 		59.6
(3)
A 		31
avr 36
(-2) 		48.7
(0.1) 		54.8
(1.2) 		30
(-3) 		47.8
(-0) 		65.7
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 24.1
(0.8)
A 		17.2
(-0.4)
A 		3.2
(-3)
A 		36.1
(3)
P 		33
B 7.8
(-3)
A 		15.5
(-1.7)
A 		9.9
(-2.7)
A 		44.1
(3)
P 		36
C 17
(-2.3)
A 		23.7
(-0.7)
A 		13.7
(-3)
A 		40.3
(3)
P 		27
avr 16.3
(-1.6) 		18.8
(-1.1) 		8.9
(-3) 		40.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.2
(-3)
A 		17.2
(1.9)
A 		12.8
(0.1)
A 		5.4
(-2.9)
A 		14.5
(0.8)
A 		19.8
(3)
A 		15
B 17.1
(1.2)
A 		20.3
(2.7)
A 		18.8
(2)
A 		7.7
(-3)
A 		18.3
(1.8)
A 		21
(3)
A 		13
C 11.3
(-1.1)
A 		11.3
(-1.1)
A 		7.3
(-3)
A 		7.9
(-2.7)
A 		16.3
(1.3)
A 		20
(3)
A 		13
avr 11.2
(-1.1) 		16.3
(1.2) 		13
(-0.3) 		7
(-3) 		16.4
(1.2) 		20.3
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15372
Sequence Type Exemplar sequence
Representative Public ID C07G3.3 NCBI
Target Description C07G3.3 /REP_DB=WormBase Gene ID /WP=CE07994 /GEN=str-227 /TR=O16326 /GB=AAB65377.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071581 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-227) (str-227) mRNA, complete cds. 11/11 None
SNAP00000037801 ENSEMBL cdna:SNAP chromosome:CEL140:V:3518015:3524401:1 10/11 None
GENEFINDER00000037803 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3518015:3519627:1 11/11 None
C07G3.3 ENSEMBL cdna:known chromosome:CEL140:V:3518015:3519627:1 gene:C07G3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3518014-3519627(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-227
Ensembl C07G3.3
Entrez Gene 192037 Entrez gene
SwissProt O16326 EMBL-EBI
WormBase CE07994 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 0.0
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 1.0E-161
blast AAB65383 Seven tm receptor protein 228 [Caenorhabditis elegans] ref|NP_503980.1| Seven TM Receptor family member (str-228) [Caenorhabditis elegans] 1.0E-160
blast AAB65382 Seven tm receptor protein 226 [Caenorhabditis elegans] ref|NP_503981.1| Seven TM Receptor family member (str-226) [Caenorhabditis elegans] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-17
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.3E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503982.1 7 10-32,45-67,91-113,134-156,205-227,252-274,289-311
C07G3.3 7 10-32,45-67,91-113,134-156,205-227,252-274,289-311
SNAP00000037801 7 10-32,45-67,91-113,134-156,205-227,252-274,284-301
GENEFINDER00000037803 7 10-32,45-67,91-113,134-156,205-227,252-274,289-311
Sequence
Target Sequence 
>C. ELEGANS:191391_AT
ggtacgggttgacttggatatgcaccggatatattctctcggcaccaaatgagcacacct
cgagatttataaaggacaatgtaaaagagatattcgacttggaatttgatgaatatgtct
acttggggccatttctctacgagaaaactgataatggaactattgatgtgcacattgtgc
catttattgggttgggcataatttctggaactattgtatcatccatcataatcgtcctag
tcttcggtattctttgctaccaaaaaatcaataaactagttgccactactgcagcttctg
ccaaactcatcaagcttcagcgtcaactgttctatgcccttgttatccaaaccctagtcc
ctttcatcttaatgcatatcccagcagcaataatgtttgcgttcgttttcctggacattg
atctaggcgtctacagtgctgttgtatcaatgaccattgcaatttatccggcagttgatc
ctattccgacgttggttattgttgagaattacagaaaaaccattatcaggtacttgaaac
tagattgtgtcaaaagatcttcagtagctgtagcaacttccacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTACGGGTTGACTTGGATATGCAC 109 503 440 Antisense
TCTCGGCACCAAATGAGCACACCTC 592 611 476 Antisense
ATCATCCATCATAATCGTCCTAGTC 491 29 657 Antisense
CCTAGTCTTCGGTATTCTTTGCTAC 189 269 675 Antisense
AAACTAGTTGCCACTACTGCAGCTT 618 127 712 Antisense
ACTACTGCAGCTTCTGCCAAACTCA 550 101 724 Antisense
TTCAGCGTCAACTGTTCTATGCCCT 336 687 755 Antisense
TGTTCTATGCCCTTGTTATCCAAAC 121 563 767 Antisense
CCTAGTCCCTTTCATCTTAATGCAT 541 267 792 Antisense
TAATGTTTGCGTTCGTTTTCCTGGA 25 637 830 Antisense
CAGTAGCTGTAGCAACTTCCACGAC 559 205 1001 Antisense
Sequence Source Affymetrix Proprietary Database