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[191390_at] 7TM chemoreceptor, srh family

Description F19G12.5 /REP_DB=WormBase Gene ID /WP=CE24907 /GEN=srh-19 /TR=Q9GS13 /GB=AAG24069.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 91      4grp_total > 26      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 12
(-3)
A 		79
(2.6)
A 		28.6
(-1.6)
A 		83.8
(3)
P 		72
B 12.7
(-2.8)
A 		38
(0.3)
A 		11
(-3)
A 		59.4
(3)
A 		48
C 19.7
(-3)
A 		48.3
(2.2)
A 		25.2
(-2)
A 		52.9
(3)
A 		33
avr 14.8
(-3) 		55.1
(1.8) 		21.6
(-2.2) 		65.4
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 62.3
(3)
A 		6.5
(-3)
A 		43.1
(0.9)
A 		36.4
(0.2)
A 		43.3
(1)
A 		17.6
(-1.8)
A 		56
B 34.7
(0.2)
A 		26.9
(-0.9)
A 		12.1
(-3)
A 		49.9
(2.3)
A 		54.9
(3)
A 		17.9
(-2.2)
A 		43
C 23.6
(-1.9)
A 		37.4
(2)
A 		38.3
(2.2)
A 		41.1
(3)
A 		26.8
(-1)
A 		19.5
(-3)
A 		22
avr 40.2
(2.4) 		23.6
(-1.7) 		31.2
(0.2) 		42.5
(3) 		41.7
(2.8) 		18.3
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.4
(-3)
A 		17.1
(3)
A 		7.5
(-1.5)
A 		12.3
(0.7)
P 		13
B 4
(-2.2)
A 		9.4
(1)
A 		2.6
(-3)
A 		12.7
(3)
A 		10
C 6.5
(-3)
A 		13.9
(3)
A 		8.8
(-1.1)
A 		8.9
(-1.1)
A 		7
avr 5
(-3) 		13.5
(3) 		6.3
(-2.1) 		11.3
(1.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.5
(2.1)
A 		2.3
(-3)
A 		9.4
(0.9)
A 		9.2
(0.8)
A 		13.1
(3)
A 		4.3
(-1.9)
A 		11
B 12.1
(-0.2)
A 		8.9
(-1.1)
A 		2.9
(-3)
A 		13.2
(0.2)
A 		22.3
(3)
A 		6.7
(-1.8)
A 		19
C 8.8
(-0.2)
A 		11.4
(3)
A 		9.7
(0.9)
A 		8.3
(-0.8)
A 		8.7
(-0.3)
A 		6.5
(-3)
A 		5
avr 10.8
(0.4) 		7.5
(-1.9) 		7.3
(-2) 		10.2
(-0) 		14.7
(3) 		5.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18222
Sequence Type Exemplar sequence
Representative Public ID F19G12.5 NCBI
Target Description F19G12.5 /REP_DB=WormBase Gene ID /WP=CE24907 /GEN=srh-19 /TR=Q9GS13 /GB=AAG24069.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075865 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-19) (srh-19) mRNA, complete cds. 11/11 None
SNAP00000018682 ENSEMBL cdna:SNAP chromosome:CEL140:X:1415296:1416540:1 11/11 None
F19G12.5 ENSEMBL cdna:known chromosome:CEL140:X:1413139:1416540:1 gene:F19G12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1413138-1416540(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-19
Ensembl F19G12.5
Entrez Gene 191846 Entrez gene
SwissProt Q9GS13 EMBL-EBI
WormBase CE24907 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24069 Serpentine receptor, class h protein 19 [Caenorhabditis elegans] ref|NP_508266.1| Serpentine Receptor, class H family member (srh-19) [Caenorhabditis elegans] 0.0
blast AAG24069 Serpentine receptor, class h protein 19 [Caenorhabditis elegans] ref|NP_508266.1| Serpentine Receptor, class H family member (srh-19) [Caenorhabditis elegans] 1.0E-113
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-78
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 2.0E-77
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 3.0E-45
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508266.1 7 13-35,48-70,85-107,128-150,199-221,242-264,274-296
F19G12.5 7 13-35,48-70,85-107,128-150,199-221,242-264,274-296
SNAP00000018682 4 5-27,82-104,125-147,157-179
Sequence
Target Sequence 
>C. ELEGANS:191390_AT
taccacttcaatattccactttgcaacttatcaagatgcaactaaaattgaagctcataa
caaactaaatgctttaaaacaaaacaaaacagatcaatttttgaattgttcatcctcgtt
tttgctcatcccatttactgattacgtatccacatttgtcctaggtgcttggatatttat
aacagttattctaacattctcactaccaatcaccgctttatacatcaatatcagtatacc
acgatccacatctcacgttaattggaaaatccaaaagcaattattgaagcgtttggttat
acaattcgcagtacatgagattttaatgggaataccacattgtatgttcatttacgcagt
tctatttggttatcaaagtgaaacgctagcttacagcggattcgtctctttttcctatca
cggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCACTTCAATATTCCACTTTGCA 94 651 444 Antisense
TTGAATTGTTCATCCTCGTTTTTGC 119 703 544 Antisense
TGCTCATCCCATTTACTGATTACGT 238 581 566 Antisense
GTATCCACATTTGTCCTAGGTGCTT 560 455 589 Antisense
GTTATTCTAACATTCTCACTACCAA 656 447 628 Antisense
TACCAATCACCGCTTTATACATCAA 142 649 647 Antisense
ATATCAGTATACCACGATCCACATC 621 19 671 Antisense
CCACGATCCACATCTCACGTTAATT 84 275 682 Antisense
GTTCATTTACGCAGTTCTATTTGGT 168 443 789 Antisense
AGCTTACAGCGGATTCGTCTCTTTT 358 79 831 Antisense
TCGTCTCTTTTTCCTATCACGGAAT 9 605 845 Antisense
Sequence Source Affymetrix Proprietary Database