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[191389_s_at] osteonectin

Description C44B12.2 /REP_DB=WormBase Gene ID /WP=CE08703 /GEN=ost-1 /TR=SW:P34714 /GB=AAB88325.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=osteonectin
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 22      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 04      6grp_total > 22      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9244
1 2 3 4 range
A 6603.8
(0.6)
P 		10170
(3)
P 		6733.1
(0.7)
P 		1196.1
(-3)
P 		8974
B 7904.6
(3)
P 		7391.3
(2.6)
P 		7856.3
(3)
P 		989.9
(-3)
P 		6915
C 6681.7
(2.1)
P 		7741.9
(3)
P 		6933.2
(2.3)
P 		926.4
(-3)
P 		6816
avr 7063.4
(1.9) 		8434.4
(3) 		7174.2
(2) 		1037.5
(-3) 		7397

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3681
1 2 3 4 5 6 range
A 5268.5
(2.1)
P 		5787.2
(3)
P 		4488.6
(0.8)
P 		4129.7
(0.2)
P 		3308.5
(-1.2)
P 		2208.2
(-3)
P 		3579
B 5831.5
(3)
P 		5065.8
(1.6)
P 		5359.2
(2.2)
P 		3930.6
(-0.4)
P 		3541.8
(-1.1)
P 		2470.6
(-3)
P 		3361
C 5837
(2.9)
P 		5392.5
(2.1)
P 		5889.4
(3)
P 		3627.8
(-0.9)
P 		4438.4
(0.5)
P 		2410.9
(-3)
P 		3479
avr 5645.7
(3) 		5415.2
(2.6) 		5245.7
(2.3) 		3896
(-0.2) 		3762.9
(-0.4) 		2363.2
(-3) 		3283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2365
1 2 3 4 range
A 2404.4
(3)
P 		2207.6
(2.5)
P 		1760.2
(1.3)
P 		175.1
(-3)
P 		2229
B 2520.7
(3)
P 		1825.5
(1.2)
P 		1820.5
(1.2)
P 		210.9
(-3)
P 		2310
C 2211.8
(2.5)
P 		2225.8
(2.5)
P 		2416.4
(3)
P 		156.2
(-3)
P 		2260
avr 2379
(3) 		2086.3
(2.2) 		1999
(2) 		180.7
(-3) 		2198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1626
1 2 3 4 5 6 range
A 971.2
(-1.3)
P 		2058.2
(3)
P 		977.5
(-1.3)
P 		1047.4
(-1)
P 		998.4
(-1.2)
P 		537.6
(-3)
P 		1521
B 2029.1
(3)
P 		1686.2
(1.1)
P 		1301.4
(-0.9)
P 		1041.1
(-2.4)
P 		1439
(-0.2)
P 		921.3
(-3)
P 		1108
C 2163.5
(3)
P 		1645.4
(0.8)
P 		1499
(0.2)
P 		729.6
(-3)
P 		1436.2
(-0)
P 		807.1
(-2.7)
P 		1434
avr 1721.3
(2.6) 		1796.6
(3) 		1259.3
(-0.1) 		939.4
(-1.9) 		1291.2
(0.1) 		755.3
(-3) 		1041
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191389_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10877
Sequence Type Exemplar sequence
Representative Public ID C44B12.2 NCBI
Target Description C44B12.2 /REP_DB=WormBase Gene ID /WP=CE08703 /GEN=ost-1 /TR=SW:P34714 /GB=AAB88325.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=osteonectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067638 NCBI Caenorhabditis elegans C44B12.2 (osteonectin) mRNA, complete cds. 11/11 None
SNAP00000002997 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1108403:1110567:1 11/11 None
GENEFINDER00000003003 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1107449:1110567:1 11/11 None
C44B12.2 ENSEMBL cdna:known chromosome:CEL140:IV:1107435:1110845:1 gene:C44B12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1107454-1110573(+) 100.0 100.0
Public Domain and Genome References
Gene Title osteonectin
Gene Symbol ost-1
Ensembl C44B12.2
Entrez Gene 176931 Entrez gene
SwissProt P34714 EMBL-EBI
WormBase CE08703 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1594354_AT similar to SPARC-like protein 1 precursor (High endothelial venule protein) (Hevin) (MAST 9) cfa
CANINE:1588998_AT similar to SPARC-like protein 1 precursor (High endothelial venule protein) (Hevin) (MAST 9) cfa
CANINE:1583269_S_AT similar to SPARC-like protein 1 precursor (High endothelial venule protein) (Hevin) (MAST 9) cfa
CANINE:1583268_AT similar to SPARC-like protein 1 precursor (High endothelial venule protein) (Hevin) (MAST 9) cfa
CANINE_2:CFA.3247.1.S1_AT similar to SPARC-like protein 1 precursor (High endothelial venule protein) (Hevin) (MAST 9) cfa
CANINE_2:CFAAFFX.15001.1.S1_S_AT similar to SPARC-like protein 1 precursor (High endothelial venule protein) (Hevin) (MAST 9) cfa
DROSOPHILA_2:1625825_AT dm
DROSGENOME1:144147_AT dm
CHICKEN:GGAAFFX.6912.1.S1_AT similar to hatching-suppressed osteonectin-like retinal protein precursor - Japanese quail gga
HG-U95AV2:36627_AT SPARC-like 1 (mast9, hevin) hs
HG-U133A:200795_AT SPARC-like 1 (mast9, hevin) hs
HG-U133_PLUS_2:200795_AT SPARC-like 1 (mast9, hevin) hs
HG-FOCUS:200795_AT SPARC-like 1 (mast9, hevin) hs
HG-U133A_2:200795_AT SPARC-like 1 (mast9, hevin) hs
HU35KSUBC:RC_AA069768_S_AT SPARC-like 1 (mast9, hevin) hs
HUGENEFL:X86693_AT SPARC-like 1 (mast9, hevin) hs
U133_X3P:G4758521_3P_AT SPARC-like 1 (mast9, hevin) hs
HG-U95C:57926_AT SPARC-like 1 (mast9, hevin) hs
HU35KSUBB:RC_AA045745_AT SPARC-like 1 (mast9, hevin) hs
MU11KSUBA:U64827_S_AT SPARC-like 1 (mast9, hevin) mm
MG-U74AV2:160319_AT SPARC-like 1 (mast9, hevin) mm
MG-U74CV2:171420_R_AT SPARC-like 1 (mast9, hevin) mm
MOE430A:1416114_AT SPARC-like 1 (mast9, hevin) mm
MOUSE430A_2:1416114_AT SPARC-like 1 (mast9, hevin) mm
MOUSE430_2:1416114_AT SPARC-like 1 (mast9, hevin) mm
RG-U34A:U27562_AT SPARC-like 1 (mast9, hevin) rn
RAE230A:1386865_AT SPARC-like 1 (mast9, hevin) rn
RAT230_2:1386865_AT SPARC-like 1 (mast9, hevin) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500039 C44B12.2 [Caenorhabditis elegans] gb|AAB88325.1| Osteonectin (sparc) related protein 1 [Caenorhabditis elegans] sp|P34714|SPRC_CAEEL SPARC precursor (Secreted protein acidic and rich in cysteine) (Osteonectin) (ON) (Basement-membrane protein 40) (BM-40) gb|AAA16827.1| osteonectin 1.0E-140
blast CAE74733 Hypothetical protein CBG22551 [Caenorhabditis briggsae] 1.0E-138
blast NP_500039 C44B12.2 [Caenorhabditis elegans] gb|AAB88325.1| Osteonectin (sparc) related protein 1 [Caenorhabditis elegans] sp|P34714|SPRC_CAEEL SPARC precursor (Secreted protein acidic and rich in cysteine) (Osteonectin) (ON) (Basement-membrane protein 40) (BM-40) gb|AAA16827.1| osteonectin 1.0E-121
blast CAE74733 Hypothetical protein CBG22551 [Caenorhabditis briggsae] 1.0E-119
blast BAB20042.1 SPARC [Artemia franciscana] 6.0E-55
Sequence
Target Sequence 
>C. ELEGANS:191389_S_AT
agaaccaacttgtgagtgcatctcaaagtgcccagaactcgacggagacccgatggataa
ggtgtgcgccaacaacaaccaaaccttcacctccctctgtgacctctaccgtgagagatg
cttgtgcaagagaaagtccaaggagtgctccaaggctttcaacgccaaagtccacttgga
atacctcggagaatgcaagaagcttgatgagtgcaccgaagagcacatggctcaattccc
agaacgcatggctgactggctcttccaggtcatgaaggagcttaagaagagacgtgagct
ccacaagctcgagtgggaagagctcctctccgaggccgagaacgacgacgagaagaagca
cgtgtacccagttatctggaagttctgcgagcttgacaccaagccacatgataagtccgt
ctcccaccacgagctcattccaatcactgctccagtcatcccaatggaatcctgcatcaa
gccattcctcgagggatgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACCAACTTGTGAGTGCATCTCA 611 73 222 Antisense
GCATCTCAAAGTGCCCAGAACTCGA 200 309 239 Antisense
GAACTCGACGGAGACCCGATGGATA 162 347 256 Antisense
CCTCTGTGACCTCTACCGTGAGAGA 311 267 315 Antisense
CAAGGCTTTCAACGCCAAAGTCCAC 181 183 372 Antisense
AAGTCCACTTGGAATACCTCGGAGA 94 155 389 Antisense
ACATGGCTCAATTCCCAGAACGCAT 203 107 446 Antisense
GCTCGAGTGGGAAGAGCTCCTCTCC 490 299 528 Antisense
TCCTCTCCGAGGCCGAGAACGACGA 380 591 545 Antisense
ATCTGGAAGTTCTGCGAGCTTGACA 421 33 595 Antisense
ATCAAGCCATTCCTCGAGGGATGCG 59 27 697 Antisense
Sequence Source Affymetrix Proprietary Database