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[191388_at]

Description M03F4.3 /REP_DB=WormBase Gene ID /WP=CE12360 /TR=Q23013 /GB=AAB04573.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 16      4grp_total > 31      6grp_cgc > 03      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 149.5
(3)
P 		7.4
(-3)
A 		21
(-2.4)
A 		34.1
(-1.9)
A 		142
B 131
(3)
P 		57.2
(-1.8)
A 		39.5
(-3)
A 		83
(-0.1)
A 		92
C 132.3
(3)
P 		34.2
(-3)
A 		59.6
(-1.4)
A 		106
(1.4)
A 		98
avr 137.6
(3) 		32.9
(-3) 		40
(-2.6) 		74.4
(-0.6) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 106.4
(3)
A 		80.6
(1.4)
A 		58.7
(0.1)
A 		26.7
(-1.8)
A 		27.8
(-1.8)
A 		7.5
(-3)
A 		99
B 141.4
(3)
P 		92
(0.8)
A 		7.6
(-3)
A 		33.9
(-1.8)
A 		51.5
(-1)
P 		66.2
(-0.4)
A 		134
C 79.9
(1.1)
M 		113.2
(3)
A 		5.4
(-3)
A 		9.6
(-2.8)
A 		41.9
(-1)
A 		11.1
(-2.7)
A 		108
avr 109.2
(3) 		95.3
(2) 		23.9
(-3) 		23.4
(-3) 		40.4
(-1.8) 		28.3
(-2.7) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 54.4
(3)
P 		1.6
(-3)
A 		5.5
(-2.6)
A 		5
(-2.6)
A 		53
B 41.8
(3)
P 		14.1
(-2.1)
A 		9.2
(-3)
A 		17.7
(-1.4)
A 		33
C 43.8
(3)
P 		9.8
(-3)
A 		20.8
(-1.1)
A 		17.9
(-1.6)
A 		34
avr 46.7
(3) 		8.5
(-3) 		11.8
(-2.5) 		13.5
(-2.2) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 19.6
(1)
A 		28.7
(3)
A 		12.8
(-0.5)
A 		6.8
(-1.9)
A 		8.4
(-1.5)
A 		1.8
(-3)
A 		27
B 49.2
(3)
P 		30.6
(0.6)
A 		1.8
(-3)
A 		9
(-2.1)
A 		20.9
(-0.6)
P 		24.7
(-0.1)
A 		47
C 29.6
(2.1)
M 		34.6
(3)
A 		1.4
(-3)
A 		1.9
(-2.9)
A 		13.5
(-0.8)
A 		3.7
(-2.6)
A 		33
avr 32.8
(3) 		31.3
(2.7) 		5.3
(-3) 		5.9
(-2.9) 		14.3
(-1) 		10.1
(-2) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15967
Sequence Type Exemplar sequence
Representative Public ID M03F4.3 NCBI
Target Description M03F4.3 /REP_DB=WormBase Gene ID /WP=CE12360 /TR=Q23013 /GB=AAB04573.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029633(11), NM_001029634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029633 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-126) (tag-126) mRNA, complete cds. 11/11 None
NM_001029634 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-126) (tag-126) mRNA, complete cds. 11/11 None
GENEFINDER00000026201 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4950298:4955100:1 11/11 None
SNAP00000026189 ENSEMBL cdna:SNAP chromosome:CEL140:X:4953553:4955100:1 11/11 None
M03F4.3a ENSEMBL cdna:known chromosome:CEL140:X:4948016:4955298:1 gene:M03F4.3 11/11 None
M03F4.3b ENSEMBL cdna:known chromosome:CEL140:X:4950298:4955100:1 gene:M03F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4950298-4955101(+) 100.0 100.0
Public Domain and Genome References
Ensembl M03F4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04573 Temporarily assigned gene name protein 126, isoform a [Caenorhabditis elegans] ref|NP_001024804.1| Temporarily Assigned Gene name family member (tag-126) [Caenorhabditis elegans] 0.0
blast AAQ82847 Temporarily assigned gene name protein 126, isoform b [Caenorhabditis elegans] ref|NP_001024805.1| Temporarily Assigned Gene name family member (tag-126) [Caenorhabditis elegans] 0.0
blast CAE68669 Hypothetical protein CBG14571 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.4E-104
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.4E-104
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.4E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024804.1 7 73-95,108-130,145-167,188-210,238-260,469-491,506-528
NP_001024805.1 8 21-40,101-123,136-158,173-195,216-238,266-288,497-519,534-556
M03F4.3a 7 73-95,108-130,145-167,188-210,238-260,469-491,506-528
M03F4.3b 8 21-40,101-123,136-158,173-195,216-238,266-288,497-519,534-556
GENEFINDER00000026201 8 21-40,101-123,136-158,173-195,216-238,266-288,497-519,534-556
SNAP00000026189 4 2-24,51-73,282-304,319-341
Sequence
Target Sequence 
>C. ELEGANS:191388_AT
aactacgtgcaatatctccatgtccctggtgaccaactcgcctccaaatggattacaaaa
agaggctaaaaactcaatggagcgagaatgtcattcgctggctgacattgtcaacagcgc
ggacactcctgtgcggaagaacaccgaagtcggcgtagctccgtcgttgagcaaaagagc
cagacaatgcaacgcgaggctgcagcctaataacttacttcaaaaggctcacgagcatta
tcaaattaacggtcccggcaaagctgttcgtggctcgaaagaaaaaatggtgtatatgag
agaacgaaaggcactgaaaactataggaatcgtggttttaggattcattatctgctggat
gccatttttcattatgtacctagtagaagttttcatttcggatccagtcgccgaatcacc
aatttatagaatcacttctgagttcttcctgtggcttgggtactccaattcggttctcaa
ccccatcatttacaccatgtataatggagatttccggcggtgcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTACGTGCAATATCTCCATGTCC 683 139 1179 Antisense
TCATTCGCTGGCTGACATTGTCAAC 154 619 1269 Antisense
GGACACTCCTGTGCGGAAGAACACC 93 527 1299 Antisense
AACACCGAAGTCGGCGTAGCTCCGT 457 123 1318 Antisense
GACAATGCAACGCGAGGCTGCAGCC 545 359 1361 Antisense
GGCTGCAGCCTAATAACTTACTTCA 92 539 1376 Antisense
AGTTTTCATTTCGGATCCAGTCGCC 442 61 1566 Antisense
GAATCACTTCTGAGTTCTTCCTGTG 614 327 1607 Antisense
TTGGGTACTCCAATTCGGTTCTCAA 498 707 1634 Antisense
TCAACCCCATCATTTACACCATGTA 481 631 1655 Antisense
AATGGAGATTTCCGGCGGTGCTTCC 352 163 1681 Antisense
Sequence Source Affymetrix Proprietary Database