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[191387_at] 7TM chemoreceptor, srd family

Description C39B5.12 /REP_DB=WormBase Gene ID /WP=CE24838 /GEN=srd-65 /TR=Q9N5X1 /GB=AAF39775.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 03      4grp_total > 20      6grp_cgc > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 52.3
(-1.2)
A 		34.7
(-3)
A 		51.9
(-1.3)
A 		94.7
(3)
A 		60
B 61.5
(0.5)
A 		65.8
(0.7)
A 		7.4
(-3)
A 		101.1
(3)
M 		94
C 60.4
(0.6)
A 		43.4
(-2.4)
A 		40
(-3)
A 		74.1
(3)
M 		34
avr 58.1
(-0.4) 		48
(-1.4) 		33.1
(-3) 		90
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 123.4
(3)
A 		32.1
(-3)
A 		62.1
(-1)
A 		70.9
(-0.5)
A 		47.1
(-2)
A 		62.1
(-1)
A 		91
B 57.1
(0.3)
A 		57.7
(0.3)
A 		13.3
(-3)
A 		93
(3)
A 		63.2
(0.8)
A 		36.3
(-1.3)
A 		80
C 44.7
(-2.4)
A 		111
(3)
A 		55.2
(-1.5)
A 		58
(-1.3)
A 		38.1
(-2.9)
A 		36.8
(-3)
A 		74
avr 75.1
(3) 		66.9
(1.4) 		43.5
(-3) 		74
(2.8) 		49.5
(-1.9) 		45.1
(-2.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 19
(3)
A 		7.5
(-3)
A 		13.6
(0.2)
A 		13.9
(0.3)
A 		12
B 19.6
(2.4)
A 		16.2
(1.4)
A 		1.7
(-3)
A 		21.5
(3)
M 		20
C 20
(3)
A 		12.5
(-3)
A 		13.9
(-1.9)
A 		12.5
(-3)
M 		8
avr 19.5
(3) 		12.1
(-1.5) 		9.7
(-3) 		16
(0.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 22.7
(3)
A 		11.4
(-3)
A 		13.5
(-1.9)
A 		18
(0.5)
A 		14.2
(-1.5)
A 		15.1
(-1)
A 		11
B 19.9
(1.5)
A 		19.2
(1.3)
A 		3.2
(-3)
A 		24.6
(2.7)
A 		25.7
(3)
A 		13.5
(-0.3)
A 		23
C 16.6
(-1.7)
A 		33.9
(3)
A 		14
(-2.4)
A 		11.7
(-3)
A 		12.3
(-2.8)
A 		12.3
(-2.8)
A 		22
avr 19.7
(2) 		21.5
(3) 		10.2
(-3) 		18.1
(1.2) 		17.4
(0.8) 		13.6
(-1.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8121
Sequence Type Exemplar sequence
Representative Public ID C39B5.12 NCBI
Target Description C39B5.12 /REP_DB=WormBase Gene ID /WP=CE24838 /GEN=srd-65 /TR=Q9N5X1 /GB=AAF39775.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065113 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-65) (srd-65) mRNA, complete cds. 11/11 None
C39B5.12 ENSEMBL cdna:known chromosome:CEL140:III:2222471:2223988:-1 gene:C39B5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012608 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2222470-2223988(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-65
Ensembl C39B5.12
Entrez Gene 191823 Entrez gene
SwissProt Q9N5X1 EMBL-EBI
WormBase CE24838 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39775 Serpentine receptor, class d (delta) protein 65 [Caenorhabditis elegans] ref|NP_497514.1| Serpentine Receptor, class D (delta) family member (srd-65) [Caenorhabditis elegans] 0.0
blast AAO91684 Serpentine receptor, class d (delta) protein 64 [Caenorhabditis elegans] ref|NP_497445.2| Serpentine Receptor, class D (delta) family member (srd-64) [Caenorhabditis elegans] 1.0E-115
blast CAB07574 Hypothetical protein F13A7.2 [Caenorhabditis elegans] ref|NP_507143.2| Serpentine Receptor, class D (delta) family member (srd-63) [Caenorhabditis elegans] sp|O17800|SRD63_CAEEL Serpentine receptor class delta-63 (Protein srd-63) 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497514.1 7 10-32,44-63,83-105,126-148,185-207,239-261,271-293
C39B5.12 7 10-32,44-63,83-105,126-148,185-207,239-261,271-293
Sequence
Target Sequence 
>C. ELEGANS:191387_AT
ggaaattggccgtaacaccttgattttttcttggcattacctgttcataatagcctatct
gacttctaccttgattcctccctccgaccatctggcagtctacaatgaaacgctagccca
ttaccctgagtatgactacactccgtatctgaattttggagggttcagccaagctcaaaa
agtttatctcgataattctacagtggctatgttccttgtcacgttgtattttccaatgat
cggcagctactggaagcatcaggcgatgaagcttcttaaacctcatgtatccccaaacac
atcggacgctacacgtgttatgtttcggaaaatgattattggcctgaactttcaaatctt
tctgccgatgcttagttatatccccgtagtgtttttatttattctgattcaagtcactgg
ccatcaattcctgatctctcagtacacaataacctgtctaggagcacttccttgcttctt
ggatccaatttttcaaatttacttcattacaccgtacaggaacgctgttcgggctttctt
cgtgcggaagccgtctgctgatggtagttggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAATTGGCCGTAACACCTTGATT 310 527 384 Antisense
TAATAGCCTATCTGACTTCTACCTT 337 635 431 Antisense
CTAGCCCATTACCCTGAGTATGACT 501 223 496 Antisense
GTATGACTACACTCCGTATCTGAAT 706 455 513 Antisense
ACAGTGGCTATGTTCCTTGTCACGT 20 107 583 Antisense
TCTTAAACCTCATGTATCCCCAAAC 265 607 657 Antisense
AACTTTCAAATCTTTCTGCCGATGC 433 139 730 Antisense
TGCCGATGCTTAGTTATATCCCCGT 399 585 746 Antisense
TCAAGTCACTGGCCATCAATTCCTG 463 631 792 Antisense
ACAGGAACGCTGTTCGGGCTTTCTT 624 105 899 Antisense
AAGCCGTCTGCTGATGGTAGTTGGG 536 147 931 Antisense
Sequence Source Affymetrix Proprietary Database