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[191384_s_at] Yeast YIL023C-like protein

Description C14H10.1 /REP_DB=WormBase Gene ID /WP=CE23542 /TR=Q17996 /GB=CAA90736.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Yeast YIL023C-like protein
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 55      6grp_total > 81      4grp_total > 58      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1666
1 2 3 4 range
A 772.1
(-1.3)
P 		1868.5
(3)
P 		1818.2
(2.8)
P 		331
(-3)
P 		1538
B 847.6
(-1)
P 		1877.6
(3)
P 		1747.7
(2.5)
P 		350.8
(-3)
P 		1527
C 760.9
(-1.3)
P 		1728.1
(2.1)
P 		1968.4
(3)
P 		302
(-3)
P 		1666
avr 793.5
(-1.2) 		1824.7
(2.9) 		1844.8
(3) 		327.9
(-3) 		1517

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1310
1 2 3 4 5 6 range
A 1462.3
(0.8)
P 		1484.7
(1)
P 		1671.3
(1.8)
P 		1692.4
(1.9)
P 		1931.9
(3)
P 		621.6
(-3)
P 		1310
B 1252.6
(-0.3)
P 		1781.4
(2.4)
P 		1565.2
(1.3)
P 		1890.8
(3)
P 		1776.4
(2.4)
P 		731.8
(-3)
P 		1159
C 1137.2
(-0.9)
P 		1542.2
(1.2)
P 		1543.2
(1.2)
P 		1903.8
(3)
P 		1540.6
(1.2)
P 		725.8
(-3)
P 		1178
avr 1284
(0.1) 		1602.8
(1.8) 		1593.2
(1.8) 		1829
(3) 		1749.6
(2.6) 		693.1
(-3) 		1136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 638
1 2 3 4 range
A 281.1
(0.3)
P 		405.6
(2)
P 		475.3
(3)
P 		48.4
(-3)
P 		427
B 270.3
(0)
P 		463.7
(3)
P 		405
(2.1)
P 		74.8
(-3)
P 		389
C 251.9
(-1.1)
P 		496.8
(1.2)
P 		686
(3)
P 		50.9
(-3)
P 		635
avr 267.8
(-0.3) 		455.4
(2.1) 		522.1
(3) 		58
(-3) 		464

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 570
1 2 3 4 5 6 range
A 269.6
(-1.4)
P 		528
(2.2)
P 		364
(-0)
P 		429.2
(0.9)
P 		583
(3)
P 		151.3
(-3)
P 		432
B 435.8
(-0.8)
P 		592.9
(1.3)
P 		380.1
(-1.6)
P 		500.8
(0)
P 		721.7
(3)
P 		272.9
(-3)
P 		449
C 421.5
(1.2)
P 		470.6
(2.3)
P 		392.8
(0.5)
P 		382.8
(0.3)
P 		498.5
(3)
P 		243
(-3)
P 		256
avr 375.6
(-0.6) 		530.5
(1.9) 		379
(-0.5) 		437.6
(0.4) 		601.1
(3) 		222.4
(-3) 		379
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191384_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17032
Sequence Type Exemplar sequence
Representative Public ID C14H10.1 NCBI
Target Description C14H10.1 /REP_DB=WormBase Gene ID /WP=CE23542 /TR=Q17996 /GB=CAA90736.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Yeast YIL023C-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077318 NCBI Caenorhabditis elegans C14H10.1 (C14H10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000006394 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10233944:10236849:-1 10/11 None
SNAP00000006390 ENSEMBL cdna:SNAP chromosome:CEL140:X:10234506:10236849:-1 11/11 None
C14H10.1 ENSEMBL cdna:known chromosome:CEL140:X:10233739:10236872:-1 gene:C14H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10233943-10236849(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YIL023C-like protein
Ensembl C14H10.1
Entrez Gene 181233 Entrez gene
SwissProt Q17996 EMBL-EBI
WormBase CE23542 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589780_AT similar to solute carrier family 39 (zinc transporter), member 13 cfa
CANINE_2:CFA.6844.1.A1_AT similar to solute carrier family 39 (zinc transporter), member 13 cfa
CANINE_2:CFA.6844.1.A1_S_AT similar to solute carrier family 39 (zinc transporter), member 13 cfa
CANINE_2:CFAAFFX.13792.1.S1_AT similar to solute carrier family 39 (zinc transporter), member 13 cfa
DROSOPHILA_2:1630858_S_AT dm
DROSGENOME1:152354_AT dm
CHICKEN:GGAAFFX.13067.1.S1_S_AT solute carrier family 39 (zinc transporter), member 13 gga
HU35KSUBA:RC_AA399634_AT solute carrier family 39 (zinc transporter), member 13 hs
U133_X3P:HS2.9070.1.S1_3P_S_AT solute carrier family 39 (zinc transporter), member 13 hs
U133_X3P:HS.9070.0.S1_3P_AT solute carrier family 39 (zinc transporter), member 13 hs
HG-U133_PLUS_2:1552295_A_AT solute carrier family 39 (zinc transporter), member 13 hs
HG-U133_PLUS_2:225277_AT solute carrier family 39 (zinc transporter), member 13 hs
HG-U133B:225277_AT solute carrier family 39 (zinc transporter), member 13 hs
HG-U95B:46687_AT solute carrier family 39 (zinc transporter), member 13 hs
HG-U95C:51695_S_AT solute carrier family 39 (zinc transporter), member 13 hs
HG-U95C:51697_R_AT solute carrier family 39 (zinc transporter), member 13 hs
MG-U74BV2:113118_AT solute carrier family 39 (metal ion transporter), member 13 mm
MOE430A:1423926_AT solute carrier family 39 (metal ion transporter), member 13 mm
MOUSE430A_2:1423926_AT solute carrier family 39 (metal ion transporter), member 13 mm
MOUSE430_2:1423926_AT solute carrier family 39 (metal ion transporter), member 13 mm
MOE430B:1460058_AT Solute carrier family 39 (metal ion transporter), member 13, mRNA (cDNA clone IMAGE:4019983) mm
MOUSE430_2:1460058_AT Solute carrier family 39 (metal ion transporter), member 13, mRNA (cDNA clone IMAGE:4019983) mm
MG-U74CV2:169327_R_AT Solute carrier family 39 (metal ion transporter), member 13, mRNA (cDNA clone IMAGE:4019983) mm
MU19KSUBA:TC23654_AT Solute carrier family 39 (metal ion transporter), member 13, mRNA (cDNA clone IMAGE:4019983) mm
RG-U34B:RC_AA945728_AT solute carrier family 39 (zinc transporter), member 13 (predicted) rn
RAE230A:1372482_AT solute carrier family 39 (zinc transporter), member 13 (predicted) rn
RAT230_2:1372482_AT solute carrier family 39 (zinc transporter), member 13 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90736 Hypothetical protein C14H10.1 [Caenorhabditis elegans] ref|NP_509719.1| C14H10.1 [Caenorhabditis elegans] 0.0
blast CAE70550 Hypothetical protein CBG17194 [Caenorhabditis briggsae] 1.0E-148
blast CAE70550 Hypothetical protein CBG17194 [Caenorhabditis briggsae] 1.0E-145
blast CAE70550 Hypothetical protein CBG17194 [Caenorhabditis briggsae] 1.0E-140
blast XP_884997 PREDICTED: similar to solute carrier family 39 (zinc transporter), member 13 isoform 4 [Bos taurus] 1.0E-51
blast XP_884997 PREDICTED: similar to solute carrier family 39 (zinc transporter), member 13 isoform 4 [Bos taurus] 4.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.9E-74
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 9.8E-71
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.7E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509719.1 7 107-129,149-168,178-200,234-256,279-298,305-324,344-361
C14H10.1 7 107-129,149-168,178-200,234-256,279-298,305-324,344-361
GENEFINDER00000006394 7 107-129,149-168,178-200,221-243,270-289,296-315,335-352
SNAP00000006390 5 107-129,149-168,178-200,234-256,279-301
Sequence
Target Sequence 
>C. ELEGANS:191384_S_AT
tctccctcatctcaaaacttgcatcgtcagaggaagaacagcacaaggcaagtagttccg
ctcactttttgaatgcgtgtgcctatttgaacttgttcgcaaatattggagataattttg
ctcatggactcgcagttggaagcagctttcttgtttctacaaagtttggaattatgacta
caattacaattctcctccacgaaattcctcacgaaataagtgattttgctattctcttac
gtgctgattttgggaaaacaaatgctattttagcgcagcttactactgctgcttttggtg
tgctcggttctttagtagcacttcacctgcacacttccaatgttccggtcattgagactc
tccttccattcaccgcaggaggatttctcaacattgctctgacagagcttctacccgaga
ttagcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCTCATCTCAAAACTTGCATC 450 611 584 Antisense
GCACAAGGCAAGTAGTTCCGCTCAC 478 317 624 Antisense
GCGTGTGCCTATTTGAACTTGTTCG 505 291 658 Antisense
GGACTCGCAGTTGGAAGCAGCTTTC 256 525 709 Antisense
TACAATTACAATTCTCCTCCACGAA 600 641 762 Antisense
ATTTTGCTATTCTCTTACGTGCTGA 176 15 806 Antisense
TACTACTGCTGCTTTTGGTGTGCTC 657 645 864 Antisense
CTTTAGTAGCACTTCACCTGCACAC 358 223 893 Antisense
ATGTTCCGGTCATTGAGACTCTCCT 528 47 923 Antisense
GGATTTCTCAACATTGCTCTGACAG 591 509 964 Antisense
AGAGCTTCTACCCGAGATTAGCGCT 55 71 987 Antisense
Sequence Source Affymetrix Proprietary Database