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[191383_at] glutathione S-transferase

Description ZK546.11 /REP_DB=WormBase Gene ID /WP=CE02912 /TR=Q23520 /GB=AAA68744.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glutathione S-transferase
Cluster 6grp_total > 48      4grp_total > 31      6grp_cgc > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 286.4
(3)
P 		6.5
(-3)
A 		16.9
(-2.8)
A 		162.2
(0.3)
A 		280
B 321.6
(3)
P 		16.3
(-2.8)
A 		5.3
(-3)
A 		136.8
(-0.5)
M 		316
C 349.7
(3)
P 		18.4
(-2.9)
A 		11.2
(-3)
A 		213.6
(0.6)
A 		339
avr 319.2
(3) 		13.7
(-2.9) 		11.1
(-3) 		170.9
(0.1) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 468
(3)
P 		164.2
(-2.2)
A 		169.8
(-2.1)
A 		118.8
(-3)
A 		171.9
(-2.1)
A 		355.8
(1.1)
P 		349
B 409.3
(2.6)
P 		170
(-1.5)
A 		177.7
(-1.4)
A 		84.7
(-3)
A 		119.8
(-2.4)
A 		433
(3)
P 		348
C 398.8
(1.9)
P 		162
(-1.5)
A 		176.6
(-1.3)
A 		58.3
(-3)
A 		144
(-1.8)
A 		477.3
(3)
P 		419
avr 425.4
(3) 		165.4
(-1.6) 		174.7
(-1.4) 		87.3
(-3) 		145.2
(-2) 		422
(2.9) 		338
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 104.3
(3)
P 		1.4
(-3)
A 		4.4
(-2.8)
A 		23.7
(-1.7)
A 		103
B 102.5
(3)
P 		4
(-2.8)
A 		1.2
(-3)
A 		29.2
(-1.3)
M 		101
C 115.8
(3)
P 		5.3
(-2.9)
A 		3.9
(-3)
A 		36
(-1.3)
A 		112
avr 107.5
(3) 		3.6
(-3) 		3.2
(-3) 		29.6
(-1.5) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 86.3
(3)
P 		58.4
(0)
A 		37
(-2.3)
A 		30.1
(-3)
A 		51.9
(-0.7)
A 		86.6
(3)
P 		57
B 142.4
(2.2)
P 		56.6
(-1.5)
A 		43.1
(-2.1)
A 		22.4
(-3)
A 		48.7
(-1.9)
A 		161.4
(3)
P 		139
C 147.8
(2.5)
P 		49.4
(-1.5)
A 		44.9
(-1.7)
A 		11.7
(-3)
A 		46.6
(-1.6)
A 		159.8
(3)
P 		148
avr 125.5
(2.5) 		54.8
(-1.2) 		41.7
(-1.9) 		21.4
(-3) 		49.1
(-1.5) 		135.9
(3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4076
Sequence Type Exemplar sequence
Representative Public ID ZK546.11 NCBI
Target Description ZK546.11 /REP_DB=WormBase Gene ID /WP=CE02912 /TR=Q23520 /GB=AAA68744.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062501 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-30) (gst-30) mRNA, complete cds. 11/11 None
SNAP00000034944 ENSEMBL cdna:SNAP chromosome:CEL140:II:4933922:4935001:-1 11/11 None
GENEFINDER00000034955 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4933922:4935001:-1 11/11 None
ZK546.11 ENSEMBL cdna:known chromosome:CEL140:II:4933922:4935001:-1 gene:ZK546.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4933919-4934999(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-30
Ensembl ZK546.11
Entrez Gene 191347 Entrez gene
SwissProt Q23520 EMBL-EBI
WormBase CE02912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68744 Glutathione s-transferase protein 30 [Caenorhabditis elegans] ref|NP_494902.1| Glutathione S-Transferase family member (gst-30) [Caenorhabditis elegans] 1.0E-122
blast CAE59002 Hypothetical protein CBG02278 [Caenorhabditis briggsae] 1.0E-106
blast CAE58992 Hypothetical protein CBG02265 [Caenorhabditis briggsae] emb|CAE56959.1| Hypothetical protein CBG24809 [Caenorhabditis briggsae] 7.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.6E-9
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 7.4E-15
Sequence
Target Sequence 
>C. ELEGANS:191383_AT
atcaccggattccacaggctgattggccagctctcaagtcgactatgccgttcggaactc
ttcctgtcctttatcaggatgggaaaccacttggacaatcccatgcaatttctcgttttc
ttgctcgccaatttggaataaatggaagatgtccatgggaagaagctcaagtgaatgcaa
ttgcagatcaattcaaagattatctcaatgacatccgatcttataatctcgtgaaaatgg
gatttgcacaaggagatgccgatgctctttacaaggacacattccttccaaatttcaaga
aaaactaccaattcttcaccaatttccttaaagccagtggatctggattcttgatcggtg
actctgtcacctgggttgatctgttgattgctcaacatacatcagatcttctcagtgaca
gtggatctgtgtttgctgccagtcaatcacttctagacgaattcccagaactcaaggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACCGGATTCCACAGGCTGATTG 202 29 104 Antisense
GCTGATTGGCCAGCTCTCAAGTCGA 503 295 121 Antisense
TCGACTATGCCGTTCGGAACTCTTC 282 601 142 Antisense
GAACTCTTCCTGTCCTTTATCAGGA 696 349 158 Antisense
CAATCCCATGCAATTTCTCGTTTTC 169 183 199 Antisense
AGGAGATGCCGATGCTCTTTACAAG 280 55 354 Antisense
TACCAATTCTTCACCAATTTCCTTA 426 651 409 Antisense
GGATTCTTGATCGGTGACTCTGTCA 309 509 448 Antisense
GACTCTGTCACCTGGGTTGATCTGT 505 373 463 Antisense
GTGTTTGCTGCCAGTCAATCACTTC 70 487 532 Antisense
GACGAATTCCCAGAACTCAAGGCTC 268 379 559 Antisense
Sequence Source Affymetrix Proprietary Database