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[191381_at] 7TM chemoreceptor, srh family

Description C03G6.7 /REP_DB=WormBase Gene ID /WP=CE07881 /GEN=srh-275 /TR=O01451 /GB=AAB52307.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 61      4grp_total > 26      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 23.9
(-3)
A 		37
(-2)
A 		65.8
(0)
A 		106.6
(3)
A 		83
B 29.2
(-1.2)
A 		52.8
(3)
A 		18.7
(-3)
A 		24.9
(-1.9)
A 		34
C 35.6
(0.3)
A 		51
(3)
A 		16.7
(-3)
A 		39.3
(1)
A 		34
avr 29.6
(-3) 		46.9
(0.8) 		33.7
(-2.1) 		56.9
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 9.5
(-2.7)
A 		8.3
(-3)
A 		33.1
(2.5)
A 		35.2
(3)
A 		13.6
(-1.8)
A 		26.4
(1)
A 		27
B 24
(-3)
A 		59.1
(3)
A 		40.3
(-0.2)
A 		48.6
(1.2)
A 		36.6
(-0.8)
A 		34.9
(-1.1)
A 		35
C 45.8
(3)
A 		35.6
(1.3)
A 		34.4
(1.1)
A 		35
(1.2)
A 		27
(-0.1)
A 		9.8
(-3)
A 		36
avr 26.4
(-2) 		34.3
(1) 		35.9
(1.6) 		39.6
(3) 		25.7
(-2.2) 		23.7
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.7
(-2.5)
A 		8
(-3)
A 		17.2
(3)
A 		15.6
(2)
A 		9
B 9.3
(0.4)
A 		13
(3)
A 		4.3
(-3)
A 		5.3
(-2.3)
A 		9
C 11.8
(1)
A 		14.7
(3)
A 		5.8
(-3)
A 		6.6
(-2.5)
A 		9
avr 9.9
(-1.3) 		11.9
(3) 		9.1
(-3) 		9.2
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.8
(-3)
A 		3
(-2)
A 		7.2
(1.6)
A 		8.9
(3)
A 		4.1
(-1.1)
A 		6.4
(0.9)
A 		7
B 8.4
(-3)
A 		19.7
(3)
A 		9.8
(-2.3)
A 		12.9
(-0.6)
A 		14.9
(0.5)
A 		13
(-0.6)
A 		11
C 17
(3)
A 		10.9
(0.3)
A 		8.8
(-0.6)
A 		7
(-1.4)
A 		8.7
(-0.6)
A 		3.3
(-3)
A 		14
avr 9.1
(-0.5) 		11.2
(3) 		8.6
(-1.3) 		9.6
(0.3) 		9.2
(-0.3) 		7.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11418
Sequence Type Exemplar sequence
Representative Public ID C03G6.7 NCBI
Target Description C03G6.7 /REP_DB=WormBase Gene ID /WP=CE07881 /GEN=srh-275 /TR=O01451 /GB=AAB52307.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072475 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-275) (srh-275) mRNA, complete cds. 11/11 None
C03G6.7 ENSEMBL cdna:known chromosome:CEL140:V:7355705:7356847:1 gene:C03G6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031551 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7355705-7356848(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-275
Ensembl C03G6.7
Entrez Gene 191898 Entrez gene
SwissProt O01451 EMBL-EBI
WormBase CE07881 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52307 Serpentine receptor, class h protein 275 [Caenorhabditis elegans] ref|NP_504876.1| Serpentine Receptor, class H family member (srh-275) [Caenorhabditis elegans] 1.0E-169
blast NP_493874 Serpentine Receptor, class H family member (srh-274) [Caenorhabditis elegans] gb|AAB37958.1| Serpentine receptor, class h protein 274 [Caenorhabditis elegans] 1.0E-102
blast CAE58295 Hypothetical protein CBG01403 [Caenorhabditis briggsae] 1.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504876.1 7 15-37,50-72,92-114,135-154,190-212,239-261,276-295
C03G6.7 7 15-37,50-72,92-114,135-154,190-212,239-261,276-295
Sequence
Target Sequence 
>C. ELEGANS:191381_AT
ttgctcgtgaacattggtggcgccatgttcgtctaccttttctgatatttaactacatag
cagcttgttcatattttactccggcctattattatattccggaacaaacagaagcattgc
agaacgtttttaagatgctcccagaactcccacaagaaatttacgatgctccagtatttg
tcctagcaacagattttcgatacgtggtattcccggtctgttttatgacaaccctaatgg
ttgccgaatcagctacttttatcattttaatctatggaaatatggctgaacgaaacaaga
aactttccttatctcgtcatactatgaaaatgcagacaacttttcttcgttgccttaata
ttcaaacttctatcccattattaattctacttctgccaatgggctatcttgtgatttctc
gaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCGTGAACATTGGTGGCGCCA 253 703 377 Antisense
ATGTTCGTCTACCTTTTCTGATATT 582 47 401 Antisense
GCTTGTTCATATTTTACTCCGGCCT 413 307 439 Antisense
TTTTTAAGATGCTCCCAGAACTCCC 477 673 503 Antisense
TTCGATACGTGGTATTCCCGGTCTG 241 681 572 Antisense
GGTTGCCGAATCAGCTACTTTTATC 574 505 615 Antisense
AGAAACTTTCCTTATCTCGTCATAC 173 73 674 Antisense
GCAGACAACTTTTCTTCGTTGCCTT 694 307 708 Antisense
TATTCAAACTTCTATCCCATTATTA 600 663 735 Antisense
TAATTCTACTTCTGCCAATGGGCTA 671 631 758 Antisense
GGGCTATCTTGTGATTTCTCGAATC 212 493 777 Antisense
Sequence Source Affymetrix Proprietary Database