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[191380_at] 7TM chemoreceptor, str family

Description C09H5.3 /REP_DB=WormBase Gene ID /WP=CE08045 /GEN=str-140 /TR=O16328 /GB=AAB65388.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 32      4grp_total > 03      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 6.5
(-2.5)
A 		10.6
(-2.1)
A 		1.1
(-3)
A 		64.8
(3)
A 		64
B 19.5
(1.9)
A 		23
(3)
A 		19.1
(1.7)
A 		4.5
(-3)
A 		19
C 21.2
(-1.4)
A 		1
(-3)
A 		2.5
(-2.9)
A 		75.1
(3)
P 		74
avr 15.7
(-1.8) 		11.5
(-2.4) 		7.6
(-3) 		48.1
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.6
(-0.7)
A 		9.1
(-0.5)
A 		11.5
(0.3)
A 		9.4
(-0.4)
A 		20.2
(3)
A 		1.2
(-3)
A 		19
B 14.2
(0.7)
A 		1.5
(-3)
A 		22.3
(3)
A 		17.4
(1.6)
A 		8
(-1.1)
A 		1.5
(-3)
A 		21
C 12
(-0.2)
A 		24.4
(3)
A 		3
(-2.6)
A 		1.3
(-3)
A 		1.6
(-2.9)
A 		8
(-1.3)
A 		23
avr 11.6
(2.5) 		11.7
(2.6) 		12.3
(3) 		9.4
(1) 		9.9
(1.3) 		3.6
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.4
(-1.6)
A 		2.3
(-1.7)
A 		0.3
(-3)
A 		9.5
(3)
A 		9
B 6.2
(3)
A 		5.7
(2.4)
A 		4.4
(0.9)
A 		1
(-3)
A 		5
C 7
(0.2)
A 		0.3
(-3)
A 		0.9
(-2.7)
A 		12.7
(3)
P 		12
avr 5.2
(0.4) 		2.8
(-2.1) 		1.9
(-3) 		7.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.6
(-1.7)
A 		3.2
(0)
A 		2.5
(-0.7)
A 		2.4
(-0.8)
A 		6.1
(3)
A 		0.3
(-3)
A 		6
B 4.9
(2.4)
A 		0.5
(-3)
A 		5.4
(3)
A 		4.6
(2)
A 		3.2
(0.3)
A 		0.6
(-2.9)
A 		5
C 4.4
(0.5)
A 		7.4
(3)
A 		0.8
(-2.6)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		2.7
(-1)
A 		7
avr 3.6
(2.8) 		3.7
(3) 		2.9
(1.1) 		2.4
(-0.1) 		3.3
(2) 		1.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12181
Sequence Type Exemplar sequence
Representative Public ID C09H5.3 NCBI
Target Description C09H5.3 /REP_DB=WormBase Gene ID /WP=CE08045 /GEN=str-140 /TR=O16328 /GB=AAB65388.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072679 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-140) (str-140) mRNA, complete cds. 11/11 None
GENEFINDER00000035881 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8068469:8069662:-1 11/11 None
C09H5.3 ENSEMBL cdna:known chromosome:CEL140:V:8068469:8070491:-1 gene:C09H5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035870 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8068469-8070492(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-140
Ensembl C09H5.3
Entrez Gene 192012 Entrez gene
SwissProt O16328 EMBL-EBI
WormBase CE08045 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65388 Seven tm receptor protein 140 [Caenorhabditis elegans] ref|NP_505080.1| Seven TM Receptor family member (str-140) [Caenorhabditis elegans] 0.0
blast AAC48271 Seven tm receptor protein 139 [Caenorhabditis elegans] ref|NP_505078.1| Seven TM Receptor family member (str-139) [Caenorhabditis elegans] 1.0E-163
blast AAB65388 Seven tm receptor protein 140 [Caenorhabditis elegans] ref|NP_505080.1| Seven TM Receptor family member (str-140) [Caenorhabditis elegans] 1.0E-157
blast AAC48271 Seven tm receptor protein 139 [Caenorhabditis elegans] ref|NP_505078.1| Seven TM Receptor family member (str-139) [Caenorhabditis elegans] 1.0E-126
blast CAE66145 Hypothetical protein CBG11375 [Caenorhabditis briggsae] 3.0E-99
blast CAE66146 Hypothetical protein CBG11376 [Caenorhabditis briggsae] 5.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505080.1 7 10-29,42-64,84-106,129-151,196-218,253-275,280-302
C09H5.3 7 10-29,42-64,84-106,129-151,196-218,253-275,280-302
GENEFINDER00000035881 5 15-37,56-78,123-145,180-202,207-229
Sequence
Target Sequence 
>C. ELEGANS:191380_AT
gattttgtgtgctatttgggatttcttttaatgattgcctcttgttttctcactattgta
ttttgcgccatgaaaatatactttaaattaaaagaagatttaaattcgatgagtgtaaga
acaaaagagctaaatcgacagttaatgatgactttgatgttccaaacaatttttccattc
ttcacaatgtacagcacagttggaacaatcctaacagttccaatatttgaaatagaagtg
ggaaagctagcaaatattcctggaatgtttgctagtatttatcctgcaattgaacctatt
tttgcaattttatgtgtaaaagaattcagaaattgtgtgttatgtaagaaacattttgta
tcaaatgttattccgttgcaacactctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTGTGTGCTATTTGGGATTTC 483 429 604 Antisense
TAATGATTGCCTCTTGTTTTCTCAC 696 635 632 Antisense
CCTCTTGTTTTCTCACTATTGTATT 366 267 641 Antisense
TCTCACTATTGTATTTTGCGCCATG 435 611 651 Antisense
TAATGATGACTTTGATGTTCCAAAC 642 633 746 Antisense
TGTTCCAAACAATTTTTCCATTCTT 166 563 761 Antisense
ACAGCACAGTTGGAACAATCCTAAC 268 109 794 Antisense
AACAATCCTAACAGTTCCAATATTT 55 133 807 Antisense
ATATTCCTGGAATGTTTGCTAGTAT 326 15 857 Antisense
GAATGTTTGCTAGTATTTATCCTGC 136 333 866 Antisense
AATGTTATTCCGTTGCAACACTCTC 633 163 967 Antisense
Sequence Source Affymetrix Proprietary Database