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[191379_at] tyrosine-protein kinase

Description B0302.5 /REP_DB=WormBase Gene ID /WP=CE03870 /TR=SW:Q10928 /GB=AAA82371.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 63      6grp_total > 95      4grp_total > 08      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Increase      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 637
1 2 3 4 range
A 432.4
(-3)
P 		568.8
(-1.7)
P 		718.4
(-0.3)
P 		1065.2
(3)
P 		633
B 559.3
(-1.5)
P 		428.2
(-3)
P 		623.2
(-0.7)
P 		938.1
(3)
P 		510
C 437.3
(-3)
P 		445.6
(-2.9)
P 		591
(-0.9)
P 		883.7
(3)
P 		446
avr 476.3
(-3) 		480.9
(-2.9) 		644.2
(-0.9) 		962.3
(3) 		486

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 732
1 2 3 4 5 6 range
A 594.6
(-1.2)
P 		560.8
(-1.5)
P 		377.8
(-3)
P 		964.9
(2)
P 		1089.3
(3)
P 		754.6
(0.2)
P 		712
B 464.2
(-2.4)
P 		469.5
(-2.3)
P 		402.2
(-3)
P 		1022.1
(3)
P 		954.5
(2.3)
P 		752
(0.4)
P 		620
C 430.9
(-3)
P 		530.4
(-2.1)
P 		574.5
(-1.7)
P 		1109.9
(3)
P 		611.4
(-1.4)
P 		809.2
(0.3)
P 		679
avr 496.6
(-2.5) 		520.2
(-2.3) 		451.5
(-3) 		1032.3
(3) 		885.1
(1.5) 		771.9
(0.3) 		581
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 157.4
(0.2)
P 		123.5
(-3)
P 		187.8
(3)
P 		155.9
(0)
P 		64
B 178.4
(1.6)
P 		105.7
(-3)
P 		144.4
(-0.5)
P 		199.9
(3)
P 		94
C 144.7
(-1.7)
P 		128.1
(-3)
P 		206
(3)
P 		149
(-1.4)
P 		78
avr 160.2
(1.1) 		119.1
(-3) 		179.4
(3) 		168.3
(1.9) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 109.6
(-2.3)
P 		199.4
(-0.1)
P 		82.3
(-3)
P 		244.7
(1)
P 		328.7
(3)
P 		183.7
(-0.5)
P 		246
B 161.5
(-1.7)
P 		156.3
(-1.8)
P 		97.7
(-3)
P 		270.7
(0.6)
P 		387.8
(3)
P 		280.4
(0.8)
P 		290
C 159.7
(-2.4)
P 		161.8
(-2.2)
P 		146.2
(-3)
P 		223.2
(0.7)
P 		197.8
(-0.5)
P 		270.9
(3)
P 		125
avr 143.6
(-1.9) 		172.5
(-1) 		108.7
(-3) 		246.2
(1.2) 		304.8
(3) 		245
(1.2) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17491
Sequence Type Exemplar sequence
Representative Public ID B0302.5 NCBI
Target Description B0302.5 /REP_DB=WormBase Gene ID /WP=CE03870 /TR=SW:Q10928 /GB=AAA82371.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078384 NCBI Caenorhabditis elegans B0302.5 (B0302.5) mRNA, complete cds. 11/11 None
B0302.5 ENSEMBL cdna:known chromosome:CEL140:X:17193467:17195239:-1 gene:B0302.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034060 7/11 Cross Hyb Matching Probes None
GENEFINDER00000034062 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17193466-17195239(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase
Ensembl B0302.5
Entrez Gene 181914 Entrez gene
SwissProt Q10928 EMBL-EBI
WormBase CE03870 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82371 Hypothetical protein B0302.5 [Caenorhabditis elegans] ref|NP_510785.1| B0302.5 [Caenorhabditis elegans] sp|Q10928|YWR5_CAEEL Hypothetical protein B0302.5 in chromosome X 1.0E-93
blast CAE69693 Hypothetical protein CBG15948 [Caenorhabditis briggsae] 3.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510785.1 1 20-42
B0302.5 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:191379_AT
tgcttctttcttcttatcagtcaaggggtgtcttaccttctgtcattttttttttcatat
ttcaatgtcatcattatcactagttttttcatctttccaatttcagttttcagaaaaaaa
aacttctggaaaatgaccgcaatccgtgacaacttgtgtgaactcaaaagactcgagatt
ccacgtccaaaatgccaaggaatgcagtttgttgccacacgtggaagacaagggttttat
agaaccatccgagagaatggcgcaatgtatggaattcaactcaaaccacagggaccaaag
agaccacaactgagctcagatcttttcaacagaccaatgacggtccctgaggaaaatagc
gaagatgttgaagaagctcaaacaagccagccggaaacaagaaaagtcgagatgaataac
aataacaattacaagataagctacacttctcgtccaccattgccaccacaacaaccgaaa
cagacctacactttacaaagaacaactccacaggctcaaccaacaccccagcagccaaga
atgttctcccgttcttctggaggcatcactggtgctgtgaacaaccgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTTCTTTCTTCTTATCAGTCAAG 11 581 34 Antisense
TGTCTTACCTTCTGTCATTTTTTTT 304 559 62 Antisense
TCACTAGTTTTTTCATCTTTCCAAT 180 627 110 Antisense
AAATGACCGCAATCCGTGACAACTT 596 119 164 Antisense
AAGACTCGAGATTCCACGTCCAAAA 236 153 201 Antisense
GAATGCAGTTTGTTGCCACACGTGG 380 331 233 Antisense
CAAGATAAGCTACACTTCTCGTCCA 313 183 465 Antisense
AAAGAACAACTCCACAGGCTCAACC 77 123 530 Antisense
CACCCCAGCAGCCAAGAATGTTCTC 179 201 557 Antisense
TTCTCCCGTTCTTCTGGAGGCATCA 537 693 577 Antisense
TCACTGGTGCTGTGAACAACCGCCC 159 625 599 Antisense
Sequence Source Affymetrix Proprietary Database