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[191378_at] strictosidine synthase like

Description T12G3.4 /REP_DB=WormBase Gene ID /WP=CE06440 /TR=Q22437 /GB=CAA92983.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=strictosidine synthase like
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 64      6grp_total > 73      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 353.3
(0.2)
P 		409
(1.6)
P 		463.4
(3)
P 		228.7
(-3)
P 		235
B 375.6
(1.1)
P 		441.3
(3)
P 		439.8
(3)
P 		235.2
(-3)
P 		206
C 368.2
(0.6)
P 		380.8
(1)
P 		441.1
(3)
P 		262.5
(-3)
P 		179
avr 365.7
(0.6) 		410.4
(1.9) 		448.1
(3) 		242.1
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 735
1 2 3 4 5 6 range
A 424.7
(-3)
P 		641
(-1.2)
P 		843
(0.4)
P 		1159.5
(3)
P 		836.3
(0.4)
P 		776.8
(-0.1)
P 		735
B 441.7
(-3)
P 		583.2
(-1.3)
P 		810.2
(1.5)
P 		932.1
(3)
P 		865.4
(2.2)
P 		595
(-1.1)
P 		490
C 489.4
(-3)
P 		518.5
(-2.7)
P 		999.3
(3)
P 		967.1
(2.6)
P 		931.6
(2.2)
P 		818.5
(0.9)
P 		510
avr 451.9
(-3) 		580.9
(-1.6) 		884.2
(1.6) 		1019.6
(3) 		877.8
(1.5) 		730.1
(-0.1) 		568
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 128.6
(3)
P 		88.8
(0.5)
P 		121.1
(2.5)
P 		33.5
(-3)
P 		95
B 119.8
(3)
P 		109
(2.1)
P 		101.9
(1.5)
P 		50.1
(-3)
P 		70
C 121.9
(1.3)
P 		109.5
(0.6)
P 		153.7
(3)
P 		44.3
(-3)
P 		109
avr 123.4
(2.8) 		102.4
(1.3) 		125.6
(3) 		42.6
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 78.3
(-3)
P 		228
(1.2)
P 		183.6
(-0.1)
P 		294.1
(3)
P 		252.4
(1.8)
P 		189.1
(0.1)
P 		216
B 153.7
(-3)
P 		194.1
(-1.8)
P 		196.7
(-1.7)
P 		246.9
(-0.2)
P 		351.6
(3)
P 		221.9
(-0.9)
P 		198
C 181.4
(-2)
P 		158.2
(-3)
P 		254.3
(1)
P 		194.5
(-1.5)
P 		301.4
(3)
P 		274
(1.9)
P 		143
avr 137.8
(-3) 		193.4
(-1) 		211.5
(-0.3) 		245.2
(0.9) 		301.8
(3) 		228.3
(0.3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8736
Sequence Type Exemplar sequence
Representative Public ID T12G3.4 NCBI
Target Description T12G3.4 /REP_DB=WormBase Gene ID /WP=CE06440 /TR=Q22437 /GB=CAA92983.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=strictosidine synthase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069881 NCBI Caenorhabditis elegans T12G3.4 (T12G3.4) mRNA, complete cds. 11/11 None
SNAP00000042349 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12048239:12049830:1 11/11 None
GENEFINDER00000042357 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12048239:12049830:1 11/11 None
T12G3.4 ENSEMBL cdna:known chromosome:CEL140:IV:12048239:12049853:1 gene:T12G3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12048244-12049836(+) 100.0 100.0
Public Domain and Genome References
Gene Title strictosidine synthase like
Ensembl T12G3.4
Entrez Gene 178141 Entrez gene
SwissProt Q22437 EMBL-EBI
WormBase CE06440 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261696_AT strictosidine synthase family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16844 strictosidine synthase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92983 Hypothetical protein T12G3.4 [Caenorhabditis elegans] ref|NP_502282.1| T12G3.4 [Caenorhabditis elegans] 0.0
blast CAE62168 Hypothetical protein CBG06215 [Caenorhabditis briggsae] 0.0
blast AAH44505 Bscv (C20orf3) homolog [Danio rerio] ref|NP_997773.1| bscv (C20orf3) homolog [Danio rerio] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR004141 EMBL-EBI Strictosidine synthase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502282.1 1 40-62
T12G3.4 1 40-62
SNAP00000042349 1 40-62
GENEFINDER00000042357 1 40-62
Sequence
Target Sequence 
>C. ELEGANS:191378_AT
attctggatctcttcgaacatcgtccaaatggtcgtctcttgatttatgatccaagaaag
aaagatttgagagtactgaaagatgggctatatttcccgaatggagttcaattaagcatt
gaaaaaggaatgggaaagaatgctccatggcgggtgctctacagtgaaatgggattagct
cgagttatgcagatttgggttccaagagatcattattcaacagcacctgttaaaacttca
ccgcttattgaaaatcttcctggatatccggataacattcgtcttacaaaatccgggcac
cttctcattccaatcgcatcacatcgttccgaagaagaccgattccttgaacaaaatcca
tcagttcgagaatttatcactaaaattctatctccacaagctcttggatatgttgctaat
tatgtcgctgatgtagaaggtcttgttatcaaagtcaacacggaaactggtcaaatcatc
gagtcgtatcatgatcaaacaggacgagttgaagccgtctcaattgcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTGGATCTCTTCGAACATCGTC 647 9 757 Antisense
GAACATCGTCCAAATGGTCGTCTCT 60 351 772 Antisense
GGTCGTCTCTTGATTTATGATCCAA 307 503 787 Antisense
CCATGGCGGGTGCTCTACAGTGAAA 67 273 901 Antisense
GAGATCATTATTCAACAGCACCTGT 256 397 962 Antisense
AGCACCTGTTAAAACTTCACCGCTT 616 71 978 Antisense
TTACAAAATCCGGGCACCTTCTCAT 87 683 1040 Antisense
TCATTCCAATCGCATCACATCGTTC 316 619 1061 Antisense
GTTCCGAAGAAGACCGATTCCTTGA 555 441 1082 Antisense
AAAATTCTATCTCCACAAGCTCTTG 686 133 1138 Antisense
GAGTTGAAGCCGTCTCAATTGCGAT 605 395 1262 Antisense
Sequence Source Affymetrix Proprietary Database