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[191375_at] 7TM chemoreceptor, str family

Description C09H5.6 /REP_DB=WormBase Gene ID /WP=CE08048 /GEN=str-131 /TR=O16332 /GB=AAB65391.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_high1_10_10 > 09      6grp_total > 92      4grp_total > 02      6grp_cgc > 98      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 112.3
(-2.5)
A 		86.6
(-3)
A 		105
(-2.7)
A 		413.5
(3)
P 		327
B 115.9
(-2)
A 		116.5
(-2)
A 		95.2
(-3)
A 		221.3
(3)
P 		126
C 104.1
(-2.7)
M 		90.6
(-2.9)
A 		82.3
(-3)
A 		478.4
(3)
P 		396
avr 110.8
(-2.6) 		97.9
(-2.9) 		94.2
(-3) 		371.1
(3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 173.9
(3)
P 		109.1
(-1.6)
P 		142
(0.7)
P 		153.3
(1.5)
P 		154
(1.6)
P 		90.2
(-3)
P 		84
B 92.7
(-3)
P 		130.3
(1.2)
P 		108
(-1.3)
P 		104.4
(-1.7)
P 		144
(2.8)
P 		145.9
(3)
P 		53
C 84
(-3)
M 		148.2
(3)
P 		115.2
(-0.1)
A 		138.5
(2.1)
P 		116.9
(0.1)
P 		134.2
(1.7)
P 		64
avr 116.9
(-3) 		129.2
(0.4) 		121.7
(-1.7) 		132.1
(1.3) 		138.3
(3) 		123.4
(-1.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 40.9
(0.2)
A 		18.8
(-3)
A 		27.4
(-1.8)
A 		60.5
(3)
P 		42
B 37
(0.6)
A 		28.8
(-1.4)
A 		22.1
(-3)
A 		47.2
(3)
P 		25
C 34.5
(-2.1)
M 		26.1
(-3)
A 		28.7
(-2.7)
A 		80.7
(3)
P 		55
avr 37.5
(-1) 		24.6
(-3) 		26.1
(-2.8) 		62.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 32.1
(-0.5)
P 		38.8
(1.1)
P 		30.9
(-0.8)
P 		38.9
(1.1)
P 		46.5
(3)
P 		22
(-3)
P 		25
B 32.2
(-1.9)
P 		43.4
(0.2)
P 		26.2
(-3)
P 		27.7
(-2.7)
P 		58.5
(3)
P 		54.4
(2.2)
P 		32
C 31.1
(-1.9)
M 		45.2
(3)
P 		29.3
(-2.5)
A 		27.8
(-3)
P 		37.8
(0.4)
P 		44.9
(2.9)
P 		17
avr 31.8
(-2) 		42.5
(1.4) 		28.8
(-3) 		31.5
(-2.1) 		47.6
(3) 		40.4
(0.7) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11401
Sequence Type Exemplar sequence
Representative Public ID C09H5.6 NCBI
Target Description C09H5.6 /REP_DB=WormBase Gene ID /WP=CE08048 /GEN=str-131 /TR=O16332 /GB=AAB65391.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072683 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-131) (str-131) mRNA, complete cds. 11/11 None
SNAP00000035874 ENSEMBL cdna:SNAP chromosome:CEL140:V:8082958:8084269:-1 11/11 None
GENEFINDER00000035883 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8082958:8087832:-1 11/11 None
C09H5.6 ENSEMBL cdna:known chromosome:CEL140:V:8082958:8084269:-1 gene:C09H5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8082958-8084270(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-131
Ensembl C09H5.6
Entrez Gene 192006 Entrez gene
SwissProt O16332 EMBL-EBI
WormBase CE08048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65386 Hypothetical protein C09H5.7 [Caenorhabditis elegans] ref|NP_505086.2| C09H5.7 [Caenorhabditis elegans] 1.0E-175
blast AAB65391 Seven tm receptor protein 131 [Caenorhabditis elegans] ref|NP_505084.1| Seven TM Receptor family member (str-131) [Caenorhabditis elegans] 1.0E-174
blast AAB65391 Seven tm receptor protein 131 [Caenorhabditis elegans] ref|NP_505084.1| Seven TM Receptor family member (str-131) [Caenorhabditis elegans] 1.0E-167
blast CAE71230 Hypothetical protein CBG18099 [Caenorhabditis briggsae] 1.0E-156
blast CAE66141 Hypothetical protein CBG11370 [Caenorhabditis briggsae] 1.0E-142
blast AAB65391 Seven tm receptor protein 131 [Caenorhabditis elegans] ref|NP_505084.1| Seven TM Receptor family member (str-131) [Caenorhabditis elegans] 1.0E-138
blast CAE66141 Hypothetical protein CBG11370 [Caenorhabditis briggsae] 1.0E-107
blast AAB71275 Seven tm receptor protein 134 [Caenorhabditis elegans] ref|NP_503312.1| Seven TM Receptor family member (str-134) [Caenorhabditis elegans] 6.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.7E-39
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 7.6E-39
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505084.1 7 10-30,43-65,85-107,130-152,200-222,248-270,285-304
C09H5.6 7 10-30,43-65,85-107,130-152,200-222,248-270,285-304
SNAP00000035874 6 7-29,44-66,83-105,153-175,201-223,238-257
GENEFINDER00000035883 7 301-323,336-358,378-400,423-445,493-515,541-563,578-597
Sequence
Target Sequence 
>C. ELEGANS:191375_AT
tatttatccctgcgatttttgtctccgtcatttggtttttcttttgcttctttggattgg
atataactgtcgaaaaacaagaaatgttgaaagaaccattcatggaattttacaacgagg
attcaaatacgatgtcatttgttagtggtcttttttggagtcttgatgaaaatggaacga
agcattggaatatgaaagattgtattggatcactcggtttagctgcgttgatgattgttt
gctgtcttaccattgttttttgtggcgtaaaaacatacaaaaagatgaacgattctggaa
attcacttagcaaccggacaaaagagctcaatagacaattatttgtcacattgagtttgc
agactctcctcccattcatgctgatgtatggacctgttggacttctgttcatcttcccgc
tgtttcaaattaaatttgatattttgtcaagctcagcagccgcctcaactgctatctacc
ctgccgtcgaaccattaatcgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTATCCCTGCGATTTTTGTCTC 323 661 410 Antisense
TTTGTCTCCGTCATTTGGTTTTTCT 672 661 427 Antisense
TGGTTTTTCTTTTGCTTCTTTGGAT 371 551 442 Antisense
TTGGATCACTCGGTTTAGCTGCGTT 65 707 614 Antisense
GATTGTTTGCTGTCTTACCATTGTT 228 435 642 Antisense
GGAAATTCACTTAGCAACCGGACAA 424 527 706 Antisense
ACATTGAGTTTGCAGACTCTCCTCC 19 105 757 Antisense
CTCCTCCCATTCATGCTGATGTATG 212 235 775 Antisense
GTATGGACCTGTTGGACTTCTGTTC 602 453 795 Antisense
TCATCTTCCCGCTGTTTCAAATTAA 340 619 818 Antisense
CCTGCCGTCGAACCATTAATCGCAA 456 265 889 Antisense
Sequence Source Affymetrix Proprietary Database