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[191374_at] 7TM chemoreceptor, str family

Description Y73C8C.5 /REP_DB=WormBase Gene ID /WP=CE25588 /GEN=str-66 /TR=Q9TXW2 /GB=AAK68599.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 60      4grp_total > 03      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 3.8
(-2.8)
A 		3.3
(-3)
A 		5.2
(-2.4)
A 		22.5
(3)
A 		19
B 1.9
(-3)
A 		2.5
(-2.7)
A 		3.6
(-2.1)
A 		12.8
(3)
A 		11
C 15.1
(-1.2)
A 		3.6
(-2.7)
A 		1.7
(-3)
A 		45.9
(3)
A 		44
avr 6.9
(-2.1) 		3.1
(-3) 		3.5
(-2.9) 		27.1
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.8
(-0.5)
A 		2.5
(-2.4)
A 		2.2
(-2.9)
A 		3.7
(-0.7)
A 		2.1
(-3)
A 		6.2
(3)
A 		4
B 11.6
(-0.4)
A 		2.1
(-2.8)
A 		24.9
(3)
A 		20.3
(1.8)
A 		1.5
(-3)
A 		1.4
(-3)
A 		24
C 11.7
(1.1)
A 		3.5
(-2.2)
A 		4.7
(-1.7)
A 		16.6
(3)
A 		1.4
(-3)
A 		3.3
(-2.3)
A 		15
avr 9
(0.7) 		2.7
(-2.5) 		10.6
(1.5) 		13.5
(3) 		1.7
(-3) 		3.6
(-2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-1.4)
A 		0.7
(-3)
A 		1.4
(-1.4)
A 		3.3
(3)
A 		3
B 0.6
(-3)
A 		0.6
(-3)
A 		0.8
(-2.4)
A 		2.7
(3)
A 		2
C 5
(0.7)
A 		1
(-2.7)
A 		0.6
(-3)
A 		7.7
(3)
A 		7
avr 2.3
(-0.6) 		0.8
(-3) 		0.9
(-2.8) 		4.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.7
(-1.8)
A 		0.9
(-0.6)
A 		0.5
(-3)
A 		0.9
(-0.6)
A 		0.6
(-2.4)
A 		1.5
(3)
A 		1
B 4.1
(0.9)
A 		0.7
(-2.8)
A 		6
(3)
A 		5.4
(2.3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		6
C 4.3
(3)
A 		1.1
(-1.9)
A 		1.2
(-1.8)
A 		3.3
(1.5)
A 		0.4
(-3)
A 		1.1
(-1.9)
A 		4
avr 3
(2.6) 		0.9
(-2.1) 		2.6
(1.7) 		3.2
(3) 		0.5
(-3) 		1
(-1.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15597
Sequence Type Exemplar sequence
Representative Public ID Y73C8C.5 NCBI
Target Description Y73C8C.5 /REP_DB=WormBase Gene ID /WP=CE25588 /GEN=str-66 /TR=Q9TXW2 /GB=AAK68599.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071448 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-66) (str-66) mRNA, complete cds. 11/11 None
GENEFINDER00000003111 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3099839:3105737:-1 11/11 None
Y73C8C.5 ENSEMBL cdna:known chromosome:CEL140:V:3102955:3104061:-1 gene:Y73C8C.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3102954-3104061(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-66
Ensembl Y73C8C.5
Entrez Gene 191983 Entrez gene
SwissProt Q9TXW2 EMBL-EBI
WormBase CE25588 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33792 hypothetical protein Y73C8C.5 - Caenorhabditis elegans 0.0
blast AAK68599 Seven tm receptor protein 66 [Caenorhabditis elegans] ref|NP_503849.1| Seven TM Receptor family member (str-66) [Caenorhabditis elegans] 1.0E-173
blast T33792 hypothetical protein Y73C8C.5 - Caenorhabditis elegans 1.0E-162
blast AAK68599 Seven tm receptor protein 66 [Caenorhabditis elegans] ref|NP_503849.1| Seven TM Receptor family member (str-66) [Caenorhabditis elegans] 1.0E-153
blast AAC69342 Hypothetical protein Y73C8C.4 [Caenorhabditis elegans] ref|NP_503848.2| Y73C8C.4 [Caenorhabditis elegans] 1.0E-148
blast AAC69346 Seven tm receptor protein 68 [Caenorhabditis elegans] ref|NP_503851.1| Seven TM Receptor family member (str-68) [Caenorhabditis elegans] 5.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 5.6E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503849.1 7 10-32,44-61,89-111,132-154,196-218,243-265,285-307
Y73C8C.5 7 10-32,44-61,89-111,132-154,196-218,243-265,285-307
GENEFINDER00000003111 12 13-35,47-64,90-112,133-155,197-219,246-268,283-305,318-337,365-387,408-430,472-494,518-540
Sequence
Target Sequence 
>C. ELEGANS:191374_AT
ggatgttgtatcctttactaccaggaatttgctatgctagcactataaagtatttatgtg
cacctaatgattatacagatgaatatgtcagagactctgtagcagagaattatggattaa
atgtatctgaactcgctaggttctcattaacaccttataattctgatggctctgttatac
atactagtataatattccttttgatcgcatcatctctcatcaattttcatttctccatca
tcatattctgcagtctaaaaatgcatttcaacatgaagaaggaattggaaaagttctctg
tccagaaccaaaatttacaacggcaatacttcattgcacttgtcatacaggcgttagtac
caacaatgtttctgataacacctgccgtgccaatcttgatagctccatttttggcaccaa
tcgttggaattgaagtggattggcagtctgggaacctgtattcgcttgttggattttatc
cgccgtgtgattgtatttcagtcgcactagttgtttccgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTTGTATCCTTTACTACCAGG 40 513 410 Antisense
AACTCGCTAGGTTCTCATTAACACC 397 141 539 Antisense
CTTTTGATCGCATCATCTCTCATCA 477 221 607 Antisense
CTCATCAATTTTCATTTCTCCATCA 639 229 625 Antisense
TTCTCCATCATCATATTCTGCAGTC 484 693 640 Antisense
AATACTTCATTGCACTTGTCATACA 606 171 734 Antisense
AATGTTTCTGATAACACCTGCCGTG 457 163 774 Antisense
GATAGCTCCATTTTTGGCACCAATC 399 425 807 Antisense
GGCAGTCTGGGAACCTGTATTCGCT 122 537 851 Antisense
GGATTTTATCCGCCGTGTGATTGTA 170 509 880 Antisense
TCAGTCGCACTAGTTGTTTCCGAGT 444 623 907 Antisense
Sequence Source Affymetrix Proprietary Database