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[191373_s_at] retinol dehydrogenase like

Description F35B12.2 /REP_DB=WormBase Gene ID /WP=CE05801 /TR=Q20012 /GB=CAA98465.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=retinol dehydrogenase like
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 12      6grp_total > 34      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 698
1 2 3 4 range
A 916.8
(2.5)
P 		553.1
(-2)
P 		958.7
(3)
P 		475.9
(-3)
P 		483
B 864.7
(1)
P 		912
(1.4)
P 		1088.6
(3)
P 		412.3
(-3)
P 		676
C 917.2
(0.8)
P 		680
(-1.8)
P 		1109.9
(3)
P 		573.7
(-3)
P 		536
avr 899.6
(1.4) 		715
(-0.6) 		1052.4
(3) 		487.3
(-3) 		565

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1973
1 2 3 4 5 6 range
A 3015
(3)
P 		2328.7
(0.7)
P 		2985.6
(2.9)
P 		1643.2
(-1.6)
P 		1215.6
(-3)
P 		1386.2
(-2.4)
P 		1799
B 2946.8
(3)
P 		2367.3
(0.9)
P 		2647.5
(1.9)
P 		1647.6
(-1.7)
P 		1293.1
(-3)
P 		1338.4
(-2.8)
P 		1654
C 2452.2
(2.9)
P 		2347.6
(2.5)
P 		2475.4
(3)
P 		1611
(-0.6)
P 		1041.6
(-3)
P 		1610
(-0.6)
P 		1434
avr 2804.7
(3) 		2347.9
(1.3) 		2702.8
(2.6) 		1633.9
(-1.3) 		1183.4
(-3) 		1444.9
(-2) 		1621
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 333.8
(3)
P 		120.1
(-1.9)
P 		250.6
(1.1)
P 		69.7
(-3)
P 		264
B 275.8
(3)
P 		225.2
(1.4)
P 		252.3
(2.2)
P 		87.9
(-3)
P 		188
C 303.6
(1.3)
P 		195.5
(-1)
P 		386.8
(3)
P 		96.7
(-3)
P 		290
avr 304.4
(3) 		180.3
(-0.4) 		296.6
(2.8) 		84.8
(-3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 701
1 2 3 4 5 6 range
A 555.8
(-0.3)
P 		828.2
(3)
P 		650.2
(0.8)
P 		416.8
(-2)
P 		366.8
(-2.6)
P 		337.5
(-3)
P 		491
B 1025.3
(3)
P 		788
(0.6)
P 		642.9
(-0.9)
P 		436.4
(-3)
P 		525.4
(-2.1)
P 		499.1
(-2.4)
P 		589
C 908.9
(3)
P 		716.3
(1)
P 		630
(0.1)
P 		324
(-3)
P 		337
(-2.9)
P 		539
(-0.8)
P 		585
avr 830
(3) 		777.5
(2.3) 		641
(0.4) 		392.4
(-3) 		409.7
(-2.8) 		458.5
(-2.1) 		438
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191373_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13705
Sequence Type Exemplar sequence
Representative Public ID F35B12.2 NCBI
Target Description F35B12.2 /REP_DB=WormBase Gene ID /WP=CE05801 /TR=Q20012 /GB=CAA98465.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=retinol dehydrogenase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073540 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-20) (dhs-20) mRNA, complete cds. 11/11 None
SNAP00000002148 ENSEMBL cdna:SNAP chromosome:CEL140:V:11604956:11606796:-1 10/11 None
GENEFINDER00000002163 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11604956:11606796:-1 10/11 None
F35B12.2 ENSEMBL cdna:known chromosome:CEL140:V:11604956:11606796:-1 gene:F35B12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11604955-11607153(-) 100.0 100.0
Public Domain and Genome References
Gene Title retinol dehydrogenase like
Gene Symbol dhs-20
Ensembl F35B12.2
Entrez Gene 179590 Entrez gene
SwissProt Q20012 EMBL-EBI
WormBase CE31928 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MU11KSUBA:AA260496_S_AT retinol dehydrogenase 7 mm
MU11KSUBB:MSA.32005.0_S_AT retinol dehydrogenase 7 mm
MG-U74AV2:100634_AT retinol dehydrogenase 7 mm
MOE430A:1448723_AT retinol dehydrogenase 7 mm
MOUSE430A_2:1448723_AT retinol dehydrogenase 7 mm
MOUSE430_2:1448723_AT retinol dehydrogenase 7 mm
RG-U34A:U18762_AT retinol dehydrogenase 7 rn
RAE230A:1387240_AT retinol dehydrogenase 7 rn
RAT230_2:1387240_AT retinol dehydrogenase 7 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98465 Hypothetical protein F35B12.2 [Caenorhabditis elegans] ref|NP_505941.2| DeHydrogenases, Short chain family member (dhs-20) [Caenorhabditis elegans] 0.0
blast CAE75331 Hypothetical protein CBG23309 [Caenorhabditis briggsae] 1.0E-172
blast CAE75331 Hypothetical protein CBG23309 [Caenorhabditis briggsae] 1.0E-166
blast CAE64533 Hypothetical protein CBG09275 [Caenorhabditis briggsae] 6.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.2E-36
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.2E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505941.2 1 2-24
F35B12.2 1 2-24
SNAP00000002148 1 2-24
GENEFINDER00000002163 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:191373_S_AT
tctcaacacctgctgcaggtccctatgttgtctcaaagtttggggcagctgcatacatgg
attgtataaggtttgtaattggtgttttagacattttgataaagtttagtgtattctctt
tcgtattcaaaaatgatattcaattacttcctatctcgaatttttcaagtttgatgtttg
gtttcagaatagttcaggagtacaagcaagagctctacaatttcggagtgaaagtgagca
ttctagagcccggaatattccgtactccattgttagatgagcaagctatgctgaagagag
ttgatcatgtttggacacaaattgacgatgaaactagaactgaatacggagagacattta
aaaattattttgcaaaaatgtggaacaagacctacatctccatgagcacaacaaaaattc
attacgtcgttgataactactatcatgctctgacagcaaaatatccacgtcatcggtatt
actgtggatgggatgcaatttttgtttacgttccattgtctcttctaccaacctggtggg
ctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCAACACCTGCTGCAGGTCCCTA 300 609 518 Antisense
CAGGTCCCTATGTTGTCTCAAAGTT 154 209 533 Antisense
GGGGCAGCTGCATACATGGATTGTA 25 497 559 Antisense
TTTAGTGTATTCTCTTTCGTATTCA 320 673 622 Antisense
GAAAGTGAGCATTCTAGAGCCCGGA 605 357 747 Antisense
GAATATTCCGTACTCCATTGTTAGA 165 325 770 Antisense
GAACAAGACCTACATCTCCATGAGC 221 353 900 Antisense
ATAACTACTATCATGCTCTGACAGC 531 25 950 Antisense
ATATCCACGTCATCGGTATTACTGT 116 21 978 Antisense
TTTTGTTTACGTTCCATTGTCTCTT 320 677 1017 Antisense
CTCTTCTACCAACCTGGTGGGCTGA 501 217 1037 Antisense
Sequence Source Affymetrix Proprietary Database