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[191371_at] 7TM chemoreceptor, str family

Description C05E4.6 /REP_DB=WormBase Gene ID /WP=CE25759 /GEN=str-134 /TR=O17358 /GB=AAB71275.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_high1_10_10 > 50      6grp_total > 50      4grp_total > 18      6grp_cgc > 94      6grp_high1_sub > 03_04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 44.9
(-3)
P 		55.8
(-0.2)
P 		68.4
(3)
A 		52.9
(-1)
P 		24
B 53.1
(-1.1)
A 		41.6
(-2.3)
A 		34.9
(-3)
A 		91.7
(3)
P 		57
C 50.8
(-1.9)
P 		69
(1.2)
P 		44.1
(-3)
M 		79.5
(3)
P 		35
avr 49.6
(-2.9) 		55.5
(-1.5) 		49.1
(-3) 		74.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 44.5
(-1)
A 		48
(-0.7)
P 		85.2
(3)
P 		42.3
(-1.2)
A 		24.1
(-3)
A 		49.8
(-0.5)
P 		61
B 60.9
(0.8)
P 		48.9
(-0.8)
P 		52.4
(-0.4)
P 		77.4
(3)
P 		32.9
(-3)
P 		41.2
(-1.9)
A 		45
C 50.7
(-0.9)
P 		55.1
(-0.5)
P 		33.6
(-2.6)
A 		89.9
(3)
M 		29.9
(-3)
A 		52.6
(-0.7)
P 		60
avr 52
(0.4) 		50.7
(0.2) 		57.1
(1.1) 		69.9
(3) 		29
(-3) 		47.9
(-0.2) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 16.4
(2.1)
P 		12.1
(-0.4)
P 		17.9
(3)
A 		7.8
(-3)
P 		10
B 16.9
(1.6)
A 		10.3
(-1.8)
A 		8.1
(-3)
A 		19.5
(3)
P 		11
C 16.8
(0.2)
P 		19.8
(3)
P 		15.4
(-1.1)
M 		13.4
(-3)
P 		6
avr 16.7
(3) 		14.1
(-2) 		13.8
(-2.6) 		13.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.2
(-2.5)
A 		17.1
(2.3)
P 		18.5
(3)
P 		10.7
(-1.2)
A 		7.3
(-3)
A 		12.1
(-0.4)
P 		11
B 21.2
(3)
P 		16.3
(-0.5)
P 		12.7
(-3)
P 		20.5
(2.5)
P 		13.4
(-2.5)
P 		15.4
(-1.1)
A 		9
C 18.8
(3)
P 		16.8
(1.8)
P 		8.5
(-3)
A 		18.1
(2.6)
M 		9.7
(-2.3)
A 		17.6
(2.3)
P 		10
avr 16.1
(2.5) 		16.7
(3) 		13.2
(-0.2) 		16.4
(2.7) 		10.1
(-3) 		15
(1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15068
Sequence Type Exemplar sequence
Representative Public ID C05E4.6 NCBI
Target Description C05E4.6 /REP_DB=WormBase Gene ID /WP=CE25759 /GEN=str-134 /TR=O17358 /GB=AAB71275.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070911 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-134) (str-134) mRNA, complete cds. 11/11 None
SNAP00000009760 ENSEMBL cdna:SNAP chromosome:CEL140:V:743478:745305:1 11/11 None
GENEFINDER00000009771 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:743478:750235:1 10/11 None
C05E4.6 ENSEMBL cdna:known chromosome:CEL140:V:743478:745305:1 gene:C05E4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C05E4.5 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:743477-745305(+) 99.19 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-134
Ensembl C05E4.6
Entrez Gene 192007 Entrez gene
SwissProt O17358 EMBL-EBI
WormBase CE25759 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71273 Serpentine receptor, class i protein 4 [Caenorhabditis elegans] ref|NP_503313.1| Serpentine Receptor, class I family member (sri-4) [Caenorhabditis elegans] 0.0
blast AAB71275 Seven tm receptor protein 134 [Caenorhabditis elegans] ref|NP_503312.1| Seven TM Receptor family member (str-134) [Caenorhabditis elegans] 1.0E-171
blast CAE62275 Hypothetical protein CBG06334 [Caenorhabditis briggsae] 1.0E-159
blast AAB71275 Seven tm receptor protein 134 [Caenorhabditis elegans] ref|NP_503312.1| Seven TM Receptor family member (str-134) [Caenorhabditis elegans] 1.0E-153
blast AAB71275 Seven tm receptor protein 134 [Caenorhabditis elegans] ref|NP_503312.1| Seven TM Receptor family member (str-134) [Caenorhabditis elegans] 1.0E-144
blast CAB03307 Hypothetical protein T06C12.11 [Caenorhabditis elegans] ref|NP_506973.1| T06C12.11 [Caenorhabditis elegans] 1.0E-135
blast F88939 protein C05E4.5 [imported] - Caenorhabditis elegans 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.5E-44
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-110
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.8E-50
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.0E-14
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.1E-12
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.5E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503312.1 7 5-27,40-62,82-104,128-150,201-223,244-266,288-310
C05E4.6 7 5-27,40-62,82-104,128-150,201-223,244-266,288-310
SNAP00000009760 6 5-27,42-64,95-117,168-190,211-233,255-277
GENEFINDER00000009771 15 5-27,40-62,82-104,128-150,198-220,250-272,287-309,333-355,414-436,449-471,496-518,539-561,599-621,653-675,685-707
Sequence
Target Sequence 
>C. ELEGANS:191371_AT
aatttccatcacttggttcactttctgttatttcggcttgactataacctctgaaaaacg
agaagctcttagaattccattccaagaaaactatggggaagattcggatgttctcatgtt
tgccgctggccaatactggattttcggtgcaaatggtgaaaagatatggtgcttacgaga
ttgttttgcgactcttgggcttgttggattaatgggaatttgctgctttgtgatcatttt
ttgtggactgaagacgttcaggaaaatgatagaggttcagggctcaatgagcaagcaaac
agcggcgctgaacaaacaactttttctgacgttaacgttacagactctactcccttttat
cttaatgtacggccccgttggtcttatattctttgcgccacttttcgaatggaaccttca
acttttcgtcagctcagccggagccacgacagctatttacccggcttttgagccattaat
tgttattttctgtattagtctgttccgcaacgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCCATCACTTGGTTCACTTTC 689 173 423 Antisense
GTTCACTTTCTGTTATTTCGGCTTG 395 445 438 Antisense
ATTTCGGCTTGACTATAACCTCTGA 676 15 452 Antisense
CATGTTTGCCGCTGGCCAATACTGG 94 209 537 Antisense
GACGTTAACGTTACAGACTCTACTC 235 367 750 Antisense
ACTCTACTCCCTTTTATCTTAATGT 212 101 766 Antisense
TAATGTACGGCCCCGTTGGTCTTAT 348 633 785 Antisense
TGGTCTTATATTCTTTGCGCCACTT 247 553 801 Antisense
AATGGAACCTTCAACTTTTCGTCAG 679 161 830 Antisense
CAGCTATTTACCCGGCTTTTGAGCC 675 197 872 Antisense
GTATTAGTCTGTTCCGCAACGCAGT 398 453 914 Antisense
Sequence Source Affymetrix Proprietary Database