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[191370_at] 7TM chemoreceptor, str family

Description C07G3.5 /REP_DB=WormBase Gene ID /WP=CE07996 /GEN=str-228 /TR=O16324 /GB=AAB65383.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 03      4grp_total > 08      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 20.5
(-1.7)
A 		7
(-3)
A 		44.5
(0.7)
A 		67.6
(3)
A 		61
B 45.5
(3)
A 		17.6
(-3)
A 		42.4
(2.3)
A 		35.4
(0.8)
A 		28
C 5.8
(-3)
A 		48.9
(0.4)
A 		24.7
(-1.5)
A 		82.4
(3)
P 		77
avr 23.9
(-3) 		24.5
(-2.9) 		37.2
(-0.9) 		61.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 7.2
(-2.3)
A 		14.4
(-0.6)
A 		29.3
(3)
A 		5
(-2.8)
A 		4.3
(-3)
A 		25
(2)
A 		25
B 32.1
(0.8)
A 		21.8
(-0.5)
A 		16
(-1.3)
A 		48.6
(3)
A 		32.4
(0.9)
A 		3
(-3)
A 		46
C 18.9
(-0.6)
A 		41.6
(3)
A 		5.8
(-2.6)
A 		7.6
(-2.4)
A 		8.3
(-2.2)
A 		3.5
(-3)
A 		38
avr 19.4
(0.5) 		25.9
(3) 		17
(-0.5) 		20.4
(0.9) 		15
(-1.2) 		10.5
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.4
(0.5)
A 		1.5
(-3)
A 		11.6
(3)
A 		9.9
(2)
A 		10
B 14.5
(3)
A 		4.3
(-3)
A 		9.8
(0.2)
A 		7.5
(-1.1)
A 		10
C 1.9
(-3)
A 		14
(3)
A 		8.6
(0.3)
A 		13.9
(3)
P 		12
avr 7.9
(-0.9) 		6.6
(-3) 		10
(2.4) 		10.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-3)
A 		5.1
(1.5)
A 		6.4
(3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		6.1
(2.6)
A 		5
B 11.2
(2)
A 		7.2
(0)
A 		3.9
(-1.6)
A 		12.9
(2.9)
A 		13.2
(3)
A 		1.1
(-3)
A 		12
C 7
(0)
A 		12.7
(3)
A 		1.5
(-2.8)
A 		1.5
(-2.8)
A 		2.7
(-2.2)
A 		1.2
(-3)
A 		12
avr 6.5
(1) 		8.3
(3) 		3.9
(-1.8) 		5.2
(-0.4) 		5.7
(0.2) 		2.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15145
Sequence Type Exemplar sequence
Representative Public ID C07G3.5 NCBI
Target Description C07G3.5 /REP_DB=WormBase Gene ID /WP=CE07996 /GEN=str-228 /TR=O16324 /GB=AAB65383.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071579 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-228) (str-228) mRNA, complete cds. 11/11 None
SNAP00000037799 ENSEMBL cdna:SNAP chromosome:CEL140:V:3510004:3511651:1 10/11 None
GENEFINDER00000037809 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3507648:3511766:1 11/11 None
C07G3.5 ENSEMBL cdna:known chromosome:CEL140:V:3510004:3511766:1 gene:C07G3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3510003-3511766(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-228
Ensembl C07G3.5
Entrez Gene 192038 Entrez gene
SwissProt O16324 EMBL-EBI
WormBase CE07996 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65383 Seven tm receptor protein 228 [Caenorhabditis elegans] ref|NP_503980.1| Seven TM Receptor family member (str-228) [Caenorhabditis elegans] 0.0
blast AAB65378 Seven tm receptor protein 225 [Caenorhabditis elegans] ref|NP_503979.1| Seven TM Receptor family member (str-225) [Caenorhabditis elegans] 1.0E-168
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 1.0E-164
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 1.0E-159
blast AAB65382 Seven tm receptor protein 226 [Caenorhabditis elegans] ref|NP_503981.1| Seven TM Receptor family member (str-226) [Caenorhabditis elegans] 1.0E-156
blast AAB65383 Seven tm receptor protein 228 [Caenorhabditis elegans] ref|NP_503980.1| Seven TM Receptor family member (str-228) [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.1E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.7E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.7E-15
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.8E-15
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.1E-14
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.1E-9
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.5E-6
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503980.1 7 10-32,45-67,91-113,134-156,205-227,252-274,289-311
C07G3.5 7 10-32,45-67,91-113,134-156,205-227,252-274,289-311
SNAP00000037799 5 43-65,86-108,157-179,204-226,241-263
GENEFINDER00000037809 15 10-32,45-64,74-96,98-120,135-157,204-226,258-280,287-309,370-392,404-423,456-478,513-535,583-605,630-652,667-689
Sequence
Target Sequence 
>C. ELEGANS:191370_AT
attatggtacgcgcttgtctggatttgcaccggatacattctatcggcgcccaacgagca
cacctcaagattcatcaaggacaatgtgaaagagaaattcgatctggagttggatgagta
cgtctacctgggaccatttctctacgagagaactgaaaatggaactattgatgttcacat
tgtgccatttattgggctgggcatgatttctggaactatcgtttcttccattataatcgt
tcttgtcttcgcgattctttgctaccaaaaaatcaacaaactcgttgcaaccacggcaac
ttctgccaaactcatcaagcttcagcgccaactgttctatgcactcgtcatccaaattct
tgtgccatttgttttaatgcacattccagcggctataatgcttgtattcgcttttcttga
cattgatctaggcgtctacagtgctgttgtatcaatgaccattgcaatttatccggcagt
tgatcctattccaacgctggttattgttgagaattacagaaacgccattatcaggtacct
gtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATGGTACGCGCTTGTCTGGATT 43 13 435 Antisense
TGCACCGGATACATTCTATCGGCGC 69 573 460 Antisense
CGAGCACACCTCAAGATTCATCAAG 400 251 489 Antisense
GGGCTGGGCATGATTTCTGGAACTA 329 493 628 Antisense
AATCGTTCTTGTCTTCGCGATTCTT 488 169 669 Antisense
TTGCAACCACGGCAACTTCTGCCAA 4 703 719 Antisense
TTCAGCGCCAACTGTTCTATGCACT 337 687 755 Antisense
ACTCGTCATCCAAATTCTTGTGCCA 169 99 777 Antisense
TTTAATGCACATTCCAGCGGCTATA 190 673 807 Antisense
AATGCTTGTATTCGCTTTTCTTGAC 245 165 831 Antisense
GAAACGCCATTATCAGGTACCTGTC 580 357 953 Antisense
Sequence Source Affymetrix Proprietary Database