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[191368_s_at]

Description T10G3.5 /REP_DB=WormBase Gene ID /WP=CE18952 /TR=P92021 /GB=CAB03330.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=endosomal protein P162 like
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 53      4grp_high_8_8 > 49      6grp_highest_nonorm > 62      6grp_total > 50      4grp_total > 62      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 467.2
(3)
P 		299
(-1)
P 		359.5
(0.4)
P 		216.9
(-3)
A 		250
B 442.3
(3)
P 		378.5
(0.6)
P 		328.6
(-1.3)
P 		283.7
(-3)
P 		159
C 462.2
(3)
P 		323.9
(-0.3)
P 		423
(2.1)
P 		211
(-3)
P 		251
avr 457.2
(3) 		333.8
(-0.4) 		370.4
(0.6) 		237.2
(-3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 388.7
(-2.4)
P 		621.5
(3)
P 		511.9
(0.5)
P 		550
(1.3)
P 		362.4
(-3)
P 		494.5
(0.1)
P 		259
B 477.3
(-1.3)
P 		436.6
(-2)
P 		742.2
(3)
P 		579.5
(0.3)
P 		376.7
(-3)
P 		505.1
(-0.9)
P 		366
C 417.5
(-1.6)
P 		550.8
(1.1)
P 		588.8
(1.9)
P 		644.7
(3)
P 		345.3
(-3)
P 		512
(0.3)
P 		299
avr 427.8
(-1.4) 		536.3
(1.1) 		614.3
(3) 		591.4
(2.5) 		361.5
(-3) 		503.9
(0.4) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 170.1
(3)
P 		64.9
(-1.6)
P 		94
(-0.3)
P 		31.8
(-3)
A 		138
B 141
(3)
P 		93.5
(-0.5)
P 		76.1
(-1.8)
P 		60.5
(-3)
P 		81
C 153
(3)
P 		93.1
(-0.1)
P 		147.4
(2.7)
P 		35.6
(-3)
P 		117
avr 154.7
(3) 		83.8
(-0.8) 		105.8
(0.4) 		42.6
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 71.7
(-3)
P 		221
(3)
P 		111.5
(-1.4)
P 		139.5
(-0.3)
P 		109.4
(-1.5)
P 		120.4
(-1)
P 		149
B 166.1
(-0.1)
P 		145.3
(-3)
P 		180.2
(1.9)
P 		153.5
(-1.9)
P 		153
(-1.9)
P 		188.4
(3)
P 		43
C 154.7
(1.3)
P 		168.1
(2.7)
P 		149.9
(0.8)
P 		129.6
(-1.2)
P 		111.7
(-3)
P 		171.4
(3)
P 		60
avr 130.8
(-2.3) 		178.1
(3) 		147.2
(-0.5) 		140.9
(-1.2) 		124.7
(-3) 		160.1
(1) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191368_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13294
Sequence Type Exemplar sequence
Representative Public ID T10G3.5 NCBI
Target Description T10G3.5 /REP_DB=WormBase Gene ID /WP=CE18952 /TR=P92021 /GB=CAB03330.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=endosomal protein P162 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028956(11), NM_001028957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028956 NCBI Caenorhabditis elegans EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1) (eea-1) mRNA, complete cds. 11/11 None
NM_001028957 NCBI Caenorhabditis elegans EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1) (eea-1) mRNA, complete cds. 11/11 None
GENEFINDER00000037924 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13493728:13499958:-1 11/11 None
T10G3.5a ENSEMBL cdna:known chromosome:CEL140:V:13493659:13499963:-1 gene:T10G3.5 11/11 None
T10G3.5b ENSEMBL cdna:known chromosome:CEL140:V:13493956:13499963:-1 gene:T10G3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037917 7/11 Cross Hyb Matching Probes None
SNAP00000037918 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13493955-13499958(-) 99.97 100.0
Public Domain and Genome References
Ensembl T10G3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03330 Hypothetical protein T10G3.5a [Caenorhabditis elegans] ref|NP_001024127.1| EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1) [Caenorhabditis elegans] gb|AAK52089.1| EEA1 [Caenorhabditis elegans] 0.0
blast CAI46578 Hypothetical protein T10G3.5b [Caenorhabditis elegans] ref|NP_001024128.1| EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1) [Caenorhabditis elegans] 0.0
blast CAE62576 Hypothetical protein CBG06689 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 4.9E-31
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 4.9E-31
Sequence
Target Sequence 
>C. ELEGANS:191368_S_AT
ggatgacatccagcaaaacacaatttgaagccatgttcgccgacgttcaacagacacttt
cgaaagaaataaatgataaaactgaagaaattgaacggctcatggaaagaattgatagcc
ttgaaaaggtgaatcattcaagaatcgaagaattagagagcagattgactcaaagagaac
gagtcgttgaatctcttgaagctgatttggctgcagtcagaaatatcgaacaagagaaac
ttgatgagttgcagaaattgaaagaagaatttgatggcaagtttaaatatttcaagagta
gaatcctgttcaattctaaaaaattacagattgatgccgaccgttacagttctcggaaat
ggcttgacgatgcagaagcaattaattgtaccgaatgtggaaaggtgttttctctgacag
ttcgaaagcatcattgccgagtttgtggaaagatttattgcaatccatgcagttcaaaat
cagtccgaattgcgagtgccaagaatccagtccgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGACATCCAGCAAAACACAATT 4 513 2957 Antisense
ACAATTTGAAGCCATGTTCGCCGAC 296 115 2976 Antisense
CGCCGACGTTCAACAGACACTTTCG 228 257 2994 Antisense
GAAGCTGATTTGGCTGCAGTCAGAA 643 339 3154 Antisense
GATTGATGCCGACCGTTACAGTTCT 679 431 3285 Antisense
TACAGTTCTCGGAAATGGCTTGACG 62 645 3301 Antisense
AAAGGTGTTTTCTCTGACAGTTCGA 171 121 3357 Antisense
GACAGTTCGAAAGCATCATTGCCGA 219 369 3372 Antisense
AATCCATGCAGTTCAAAATCAGTCC 667 167 3418 Antisense
AAATCAGTCCGAATTGCGAGTGCCA 616 117 3433 Antisense
CGAGTGCCAAGAATCCAGTCCGAGC 652 247 3449 Antisense
Sequence Source Affymetrix Proprietary Database