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[191366_s_at]

Description F32A7.3B /REP_DB=WormBase Gene ID /WP=CE09844 /TR=P91865 /GB=CAB05503.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_high_8_8 > 42      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 519.7
(3)
P 		349.9
(0.1)
P 		262.1
(-1.4)
M 		170
(-3)
A 		350
B 487.9
(2.2)
P 		529.1
(3)
P 		322
(-1)
M 		216.5
(-3)
P 		313
C 564.8
(3)
P 		423.7
(0.5)
P 		272.9
(-2.1)
P 		224.1
(-3)
P 		341
avr 524.1
(3) 		434.2
(1.3) 		285.7
(-1.5) 		203.5
(-3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 503.3
(1.3)
P 		606
(3)
P 		404.4
(-0.3)
P 		422
(-0)
P 		446.1
(0.4)
P 		240.1
(-3)
P 		366
B 597
(2.8)
P 		469.5
(0.9)
P 		394.6
(-0.3)
P 		611.8
(3)
P 		482
(1.1)
P 		211
(-3)
P 		401
C 542.7
(1.2)
P 		491.1
(0.4)
P 		457.4
(-0.1)
P 		657.5
(3)
P 		406.3
(-0.9)
P 		270.5
(-3)
P 		387
avr 547.7
(2.7) 		522.2
(2.2) 		418.8
(0.3) 		563.8
(3) 		444.8
(0.8) 		240.5
(-3) 		323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 189.2
(3)
P 		76
(-1.1)
P 		68.5
(-1.4)
M 		24.9
(-3)
A 		164
B 155.6
(3)
P 		130.7
(1.6)
P 		74.6
(-1.4)
M 		46.1
(-3)
P 		110
C 187
(3)
P 		121.8
(0.4)
P 		95.1
(-0.7)
P 		37.8
(-3)
P 		149
avr 177.3
(3) 		109.5
(0.1) 		79.4
(-1.2) 		36.3
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 92.8
(-1.7)
P 		215.5
(3)
P 		88.1
(-1.9)
P 		107
(-1.1)
P 		134.6
(-0.1)
P 		58.4
(-3)
P 		157
B 207.7
(3)
P 		156.3
(0.6)
P 		95.8
(-2.2)
P 		162
(0.9)
P 		195.8
(2.4)
P 		78.7
(-3)
P 		129
C 201.2
(3)
P 		149.9
(0.2)
P 		116.4
(-1.6)
P 		132.2
(-0.7)
P 		131.5
(-0.8)
P 		90.5
(-3)
P 		111
avr 167.2
(2.6) 		173.9
(3) 		100.1
(-1.5) 		133.7
(0.5) 		154
(1.8) 		75.9
(-3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191366_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1082
Sequence Type Exemplar sequence
Representative Public ID F32A7.3B NCBI
Target Description F32A7.3B /REP_DB=WormBase Gene ID /WP=CE09844 /TR=P91865 /GB=CAB05503.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061189(10), NM_061190(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061189 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-271) (tag-271) mRNA, complete cds. 10/11 None
NM_061190 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-271) (tag-271) mRNA, complete cds. 10/11 None
SNAP00000011755 ENSEMBL cdna:SNAP chromosome:CEL140:I:14837993:14840584:-1 11/11 None
GENEFINDER00000011763 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14837993:14842939:-1 11/11 None
F32A7.3a ENSEMBL cdna:known chromosome:CEL140:I:14837785:14842957:-1 gene:F32A7.3 10/11 None
F32A7.3b ENSEMBL cdna:known chromosome:CEL140:I:14837993:14840011:-1 gene:F32A7.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14837923-14841015(-) 98.41 100.0
Public Domain and Genome References
Ensembl F32A7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05506 Hypothetical protein F32A7.3a [Caenorhabditis elegans] ref|NP_493590.2| Temporarily Assigned Gene name family member (tag-271) [Caenorhabditis elegans] 0.0
blast CAE72521 Hypothetical protein CBG19701 [Caenorhabditis briggsae] 0.0
blast CAB05503 Hypothetical protein F32A7.3b [Caenorhabditis elegans] ref|NP_493591.2| Temporarily Assigned Gene name family member (tag-271) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 1.0E-40
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 1.6E-18
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 1.0E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493590.2 1 369-391
NP_493591.2 1 264-286
F32A7.3a 1 369-391
F32A7.3b 1 264-286
SNAP00000011755 1 348-370
GENEFINDER00000011763 1 372-394
Sequence
Target Sequence 
>C. ELEGANS:191366_S_AT
aggccatcaaaggcgagctgacctcattggaaacttatttgaaggtccgtccggaagccg
acgcaatgcaaaaacaggatgacgaacgatttttcaaggatgtcaatgataagacacagt
gggaaagagtggtggatagtgagccggctaaggatcccgatgtacatcaaattgctaacg
atgcttcctatgtaacccatgacgagtatcgaatggaaaagcaagatcctcctccaataa
cggaaagagtggaaccaaacctagtgggtgttgggcacgatcttcttcaagttgttcagt
tctttaaagaaaacaaagagaaggcggtcatgtgtattgtgttagccgtgagtatggctg
caattgttgtgctctccgcgtgtatcatcactcgactgtgttcctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCCATCAAAGGCGAGCTGACCTC 449 53 791 Antisense
GCGAGCTGACCTCATTGGAAACTTA 534 289 803 Antisense
GTCCGGAAGCCGACGCAATGCAAAA 450 475 839 Antisense
GAGCCGGCTAAGGATCCCGATGTAC 578 385 931 Antisense
AAATTGCTAACGATGCTTCCTATGT 557 115 959 Antisense
GCTTCCTATGTAACCCATGACGAGT 666 305 973 Antisense
GGAAAAGCAAGATCCTCCTCCAATA 545 527 1005 Antisense
TGGGCACGATCTTCTTCAAGTTGTT 562 553 1062 Antisense
GGTCATGTGTATTGTGTTAGCCGTG 676 503 1116 Antisense
TATGGCTGCAATTGTTGTGCTCTCC 279 655 1143 Antisense
TATCATCACTCGACTGTGTTCCTCA 90 659 1173 Antisense
Sequence Source Affymetrix Proprietary Database