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[191365_at] 7TM chemoreceptor, srj family

Description T03D3.11 /REP_DB=WormBase Gene ID /WP=CE13088 /GEN=srj-44 /TR=O16986 /GB=AAG24193.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 18      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 3.1
(-3)
A 		20.1
(-1.7)
A 		7.2
(-2.7)
A 		80.6
(3)
A 		78
B 4
(-3)
A 		55.2
(1.5)
A 		9
(-2.6)
A 		71.8
(3)
P 		68
C 21.9
(-1.7)
A 		5.9
(-3)
A 		18.9
(-1.9)
A 		79.6
(3)
A 		74
avr 9.7
(-3) 		27.1
(-1.5) 		11.7
(-2.8) 		77.3
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 46.9
(3)
A 		21
(-0.5)
A 		10.8
(-1.8)
A 		1.9
(-3)
A 		32.4
(1.1)
A 		20
(-0.6)
A 		45
B 6.5
(-3)
A 		36.5
(3)
A 		7.5
(-2.8)
A 		27.2
(1.1)
A 		25
(0.7)
A 		14.3
(-1.4)
A 		30
C 10.4
(-3)
A 		21.3
(-1.5)
A 		52.8
(3)
A 		19.2
(-1.8)
A 		14
(-2.5)
A 		31.6
(0)
P 		42
avr 21.3
(0.1) 		26.3
(3) 		23.7
(1.5) 		16.1
(-3) 		23.8
(1.5) 		22
(0.5) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.1
(-3)
A 		4.4
(-1.1)
A 		1.9
(-2.6)
A 		11.8
(3)
A 		11
B 1.3
(-3)
A 		13.6
(2.3)
A 		2.1
(-2.7)
A 		15.3
(3)
P 		14
C 7.2
(-0.2)
A 		1.7
(-3)
A 		6.6
(-0.5)
A 		13.4
(3)
A 		12
avr 3.2
(-3) 		6.6
(-1) 		3.5
(-2.8) 		13.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.6
(2.2)
A 		7.5
(1.5)
A 		2.4
(-1.8)
A 		0.5
(-3)
A 		9.8
(3)
A 		4.9
(-0.2)
A 		9
B 2.3
(-2.7)
A 		12.1
(3)
A 		1.8
(-3)
A 		7.2
(0.1)
A 		10.2
(1.9)
A 		5.3
(-1)
A 		10
C 3.9
(-3)
A 		6.5
(-1.4)
A 		13.4
(3)
A 		3.9
(-3)
A 		4.5
(-2.6)
A 		10.6
(1.2)
P 		10
avr 4.9
(-1.8) 		8.7
(3) 		5.9
(-0.5) 		3.9
(-3) 		8.2
(2.4) 		6.9
(0.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15469
Sequence Type Exemplar sequence
Representative Public ID T03D3.11 NCBI
Target Description T03D3.11 /REP_DB=WormBase Gene ID /WP=CE13088 /GEN=srj-44 /TR=O16986 /GB=AAG24193.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071368 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-44) (srj-44) mRNA, complete cds. 11/11 None
T03D3.11 ENSEMBL cdna:known chromosome:CEL140:V:2844390:2845698:-1 gene:T03D3.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008143 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2844389-2845698(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-44
Ensembl T03D3.11
Entrez Gene 191948 Entrez gene
SwissProt O16986 EMBL-EBI
WormBase CE13088 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503769 Serpentine Receptor, class J family member (srj-44) [Caenorhabditis elegans] gb|AAG24193.1| Serpentine receptor, class j protein 44 [Caenorhabditis elegans] 0.0
blast T32214 hypothetical protein T03D3.10 - Caenorhabditis elegans 1.0E-142
blast NP_503768 Serpentine Receptor, class J family member (srj-45) [Caenorhabditis elegans] gb|AAG24192.1| Serpentine receptor, class j protein 45 [Caenorhabditis elegans] 1.0E-131
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503769.1 7 10-30,43-65,94-116,129-151,203-225,246-268,288-310
T03D3.11 7 10-30,43-65,94-116,129-151,203-225,246-268,288-310
Sequence
Target Sequence 
>C. ELEGANS:191365_AT
ttttctgtgtggcacgcaacgtgttattttcccggcaaagcaaattcggaacttctcgaa
tatgttagtgaagattttcaagaaaattttggaatggattcaaggaatttgaatgtgatt
ggaacactgtttagcgtaggatctcacgaaactaccctacgggcatggacggctatgtcg
atttggtcaacaatttctattgcatcaatcataacatttttcgtgatggctggacttgtt
atgcgaaaactcaggaaaatgactgtgagaacaagccaaaagacatcacaatttcaattt
gagctcctcagagctctaattgttcaaacggtcaccccaatctgcttcagtttctcaccg
tgtctactatgttggtatagcccaatatttggaatcaagctagacagatggttgaattat
ctcgaagtgaccgctttagggctgttctctttcatggacccaattgcaattattctgtgt
cttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTGTGTGGCACGCAACGTGTT 639 675 445 Antisense
GTGTTATTTTCCCGGCAAAGCAAAT 416 485 465 Antisense
GGAACACTGTTTAGCGTAGGATCTC 192 529 565 Antisense
GAAACTACCCTACGGGCATGGACGG 506 355 592 Antisense
GGACGGCTATGTCGATTTGGTCAAC 422 523 611 Antisense
TTTCGTGATGGCTGGACTTGTTATG 245 669 663 Antisense
TAATTGTTCAAACGGTCACCCCAAT 509 633 761 Antisense
AGTTTCTCACCGTGTCTACTATGTT 197 61 793 Antisense
CGAAGTGACCGCTTTAGGGCTGTTC 346 245 867 Antisense
TAGGGCTGTTCTCTTTCATGGACCC 559 653 881 Antisense
AATTGCAATTATTCTGTGTCTTCCC 342 179 906 Antisense
Sequence Source Affymetrix Proprietary Database