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[191360_at] calcineurin B subunit like

Description F30A10.1 /REP_DB=WormBase Gene ID /WP=CE09802 /TR=Q93640 /GB=CAB03019.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=calcineurin B subunit like
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 33      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 71      6grp_total > 21      4grp_total > 37      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 256
(3)
P 		220
(0.3)
P 		177.4
(-3)
P 		201.7
(-1.1)
P 		79
B 239.5
(3)
P 		211.2
(0.5)
P 		182.6
(-2)
P 		171
(-3)
P 		69
C 229.5
(0.1)
P 		272.1
(3)
P 		185.2
(-3)
P 		239.4
(0.7)
P 		87
avr 241.7
(3) 		234.4
(2.3) 		181.7
(-3) 		204
(-0.8) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 180.1
(-1.8)
P 		359.1
(1.7)
P 		422.5
(3)
P 		330.5
(1.2)
P 		255.1
(-0.3)
P 		118.6
(-3)
P 		304
B 355.9
(0.1)
P 		527.4
(3)
P 		382.3
(0.5)
P 		298
(-0.9)
P 		309.9
(-0.7)
P 		177.5
(-3)
P 		350
C 307
(1)
P 		416.7
(3)
P 		257.1
(0.1)
P 		296.8
(0.8)
P 		241.5
(-0.2)
P 		87.2
(-3)
P 		330
avr 281
(-0) 		434.4
(3) 		354
(1.4) 		308.4
(0.5) 		268.8
(-0.2) 		127.8
(-3) 		307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 93.2
(3)
P 		47.8
(-1.3)
P 		46.4
(-1.4)
P 		29.5
(-3)
P 		64
B 76.4
(3)
P 		52.2
(-0.6)
P 		42.3
(-2.1)
P 		36.4
(-3)
P 		40
C 76
(2.7)
P 		78.2
(3)
P 		64.6
(0.8)
P 		40.4
(-3)
P 		38
avr 81.9
(3) 		59.4
(0.1) 		51.1
(-1) 		35.4
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 33.2
(-2.7)
P 		127.7
(3)
P 		92
(0.8)
P 		83.8
(0.3)
P 		77
(-0.1)
P 		28.9
(-3)
P 		99
B 123.8
(0.2)
P 		175.5
(3)
P 		92.8
(-1.5)
P 		78.9
(-2.3)
P 		125.9
(0.3)
P 		66.2
(-3)
P 		109
C 113.8
(2.2)
P 		127.1
(3)
P 		65.4
(-0.8)
P 		59.7
(-1.1)
P 		78.2
(0)
P 		29.2
(-3)
P 		98
avr 90.3
(-0.1) 		143.4
(3) 		83.4
(-0.5) 		74.1
(-1.1) 		93.7
(0.1) 		41.4
(-3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1091
Sequence Type Exemplar sequence
Representative Public ID F30A10.1 NCBI
Target Description F30A10.1 /REP_DB=WormBase Gene ID /WP=CE09802 /TR=Q93640 /GB=CAB03019.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=calcineurin B subunit like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060113 NCBI Caenorhabditis elegans F30A10.1 (F30A10.1) mRNA, complete cds. 11/11 None
SNAP00000021985 ENSEMBL cdna:SNAP chromosome:CEL140:I:9480820:9482902:-1 11/11 None
GENEFINDER00000022009 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9480820:9482902:-1 11/11 None
F30A10.1 ENSEMBL cdna:known chromosome:CEL140:I:9480765:9483292:-1 gene:F30A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9480750-9483223(-) 100.0 100.0
Public Domain and Genome References
Gene Title calcineurin B subunit like
Ensembl F30A10.1
Entrez Gene 172774 Entrez gene
SwissProt Q93640 EMBL-EBI
WormBase CE09802 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597550_AT similar to calcium and integrin binding family member 2 (predicted) cfa
CANINE:1583605_S_AT similar to calcium and integrin binding family member 2 (predicted) cfa
CANINE:1583604_AT similar to calcium and integrin binding family member 2 (predicted) cfa
CANINE_2:CFA.11797.1.A1_AT similar to calcium and integrin binding family member 2 (predicted) cfa
CANINE_2:CFAAFFX.22593.1.S1_AT similar to calcium and integrin binding family member 2 (predicted) cfa
CANINE_2:CFAAFFX.22594.1.S1_S_AT similar to calcium and integrin binding family member 2 (predicted) cfa
DROSOPHILA_2:1627748_AT dm
DROSGENOME1:147582_AT dm
CHICKEN:GGA.9795.1.S1_AT calcium and integrin binding family member 2 gga
HG-U133_PLUS_2:214065_S_AT calcium and integrin binding family member 2 hs
HG-U133A_2:214065_S_AT calcium and integrin binding family member 2 hs
HG-U133A:214065_S_AT calcium and integrin binding family member 2 hs
HG-U133_PLUS_2:205008_S_AT calcium and integrin binding family member 2 hs
HG-U133A:205008_S_AT calcium and integrin binding family member 2 hs
HG-U133A_2:205008_S_AT calcium and integrin binding family member 2 hs
HG-U95AV2:39904_AT calcium and integrin binding family member 2 hs
HU35KSUBA:W07209_AT calcium and integrin binding family member 2 hs
HU35KSUBA:AA453130_AT calcium and integrin binding family member 2 hs
HU35KSUBC:RC_AA252866_AT calcium and integrin binding family member 2 hs
U133_X3P:G5453707_3P_A_AT calcium and integrin binding family member 2 hs
U133_X3P:HS.129867.1.A1_3P_AT calcium and integrin binding family member 2 hs
U133_X3P:HS.129867.0.A1_3P_A_AT calcium and integrin binding family member 2 hs
HG-U133A_2:205007_S_AT calcium and integrin binding family member 2 hs
HG-FOCUS:205007_S_AT calcium and integrin binding family member 2 hs
HG-U133_PLUS_2:205007_S_AT calcium and integrin binding family member 2 hs
HG-U133A:205007_S_AT calcium and integrin binding family member 2 hs
HG-U95AV2:39903_AT calcium and integrin binding family member 2 hs
MOE430A:1422852_AT calcium and integrin binding family member 2 mm
MOUSE430A_2:1422852_AT calcium and integrin binding family member 2 mm
MOUSE430_2:1422852_AT calcium and integrin binding family member 2 mm
MU11KSUBB:MSA.42007.0_S_AT calcium and integrin binding family member 2 mm
MG-U74AV2:99536_AT calcium and integrin binding family member 2 mm
MG-U74BV2:114062_AT calcium and integrin binding family member 2 mm
MG-U74CV2:166938_AT calcium and integrin binding family member 2 mm
MOE430B:1459833_X_AT calcium and integrin binding family member 2 mm
MOUSE430_2:1459833_X_AT calcium and integrin binding family member 2 mm
MOE430B:1447770_AT calcium and integrin binding family member 2 mm
MOUSE430_2:1447770_AT calcium and integrin binding family member 2 mm
MU19KSUBC:TC40621_AT Calcium and integrin binding family member 2, mRNA (cDNA clone MGC:11420 IMAGE:3599342) mm
RAE230A:1389166_AT calcium and integrin binding family member 2 (predicted) rn
RAT230_2:1389166_AT calcium and integrin binding family member 2 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03019 Hypothetical protein F30A10.1 [Caenorhabditis elegans] ref|NP_492514.1| F30A10.1 [Caenorhabditis elegans] 1.0E-159
blast CAB03019 Hypothetical protein F30A10.1 [Caenorhabditis elegans] ref|NP_492514.1| F30A10.1 [Caenorhabditis elegans] 1.0E-103
blast CAE60198 Hypothetical protein CBG03759 [Caenorhabditis briggsae] 4.0E-55
blast CAE60198 Hypothetical protein CBG03759 [Caenorhabditis briggsae] 1.0E-54
blast EAA10196 ENSANGP00000011134 [Anopheles gambiae str. PEST] ref|XP_314806.1| ENSANGP00000011134 [Anopheles gambiae str. PEST] 3.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.6E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.4E-5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.6E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.4E-5
Sequence
Target Sequence 
>C. ELEGANS:191360_AT
aagattgcacatttttcacgagaaaggacataattcgactatacaaaaggttttatgcat
tgaatccacataaagttccaacaaatatgcaaggaaatcggcctgcaattacaacgctga
cttttgaagaagttgagaaaatgccagaattaaaggaaaatccattcaaacgacgaatct
gtgaagttttctccgaagacggacgcggaaatttatcattcgacgattttttggacatgt
tctcagtgttttcggaaatggcaccactccagttaaaactgaaatatgctttcagaattt
atgattacgatggagatgaacttcttggacatgatgatttgagtaaaatgattcgaagtt
taacaagagatgagctgagtgatgtagaagttgaatttataattgaacgaattattgaag
aagctgatttggatggagactcgagtataaacttcgcagaatttgaacacgttgtctctc
gatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATTGCACATTTTTCACGAGAAA 594 155 428 Antisense
ATCGGCCTGCAATTACAACGCTGAC 329 35 524 Antisense
TCTGTGAAGTTTTCTCCGAAGACGG 632 607 605 Antisense
GGACGCGGAAATTTATCATTCGACG 471 523 628 Antisense
GACGATTTTTTGGACATGTTCTCAG 42 379 649 Antisense
GGACATGTTCTCAGTGTTTTCGGAA 334 525 660 Antisense
GTTTTCGGAAATGGCACCACTCCAG 153 449 675 Antisense
ATGGCACCACTCCAGTTAAAACTGA 637 51 685 Antisense
GATGGAGATGAACTTCTTGGACATG 317 407 736 Antisense
GAGACTCGAGTATAAACTTCGCAGA 268 349 863 Antisense
TTTGAACACGTTGTCTCTCGATCAC 106 667 889 Antisense
Sequence Source Affymetrix Proprietary Database