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[191359_at] 7TM chemoreceptor, srd family

Description C39B5.11 /REP_DB=WormBase Gene ID /WP=CE23577 /GEN=srd-67 /TR=Q9N5W4 /GB=AAF39774.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 19      4grp_total > 42      6grp_cgc > 11      6grp_cgc_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 113.4
(-3)
A 		148.1
(3)
A 		119.5
(-1.9)
A 		126.8
(-0.7)
A 		35
B 118.9
(-0.3)
A 		150.1
(3)
A 		127.8
(0.7)
A 		92.6
(-3)
A 		58
C 62.3
(-3)
A 		180.8
(3)
A 		102.8
(-0.9)
A 		123.2
(0.1)
A 		119
avr 98.2
(-3) 		159.7
(3) 		116.7
(-1.2) 		114.2
(-1.4) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 116.9
(3)
A 		40.3
(-3)
A 		93.4
(1.2)
A 		81.6
(0.2)
A 		87.8
(0.7)
A 		77.6
(-0.1)
A 		77
B 103.4
(3)
A 		84.3
(0.8)
A 		51.4
(-3)
A 		52
(-2.9)
A 		82.2
(0.6)
A 		65.3
(-1.4)
A 		52
C 108.6
(1.8)
A 		99.1
(0.9)
A 		121.8
(3)
A 		73.1
(-1.4)
P 		94.2
(0.5)
A 		55.6
(-3)
A 		66
avr 109.6
(3) 		74.6
(-1.8) 		88.9
(0.1) 		68.9
(-2.6) 		88.1
(0) 		66.2
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 41.3
(3)
A 		32.1
(0.6)
A 		31.2
(0.3)
A 		18.6
(-3)
A 		23
B 37.9
(3)
A 		37.1
(2.7)
A 		29.6
(0.3)
A 		19.7
(-3)
A 		18
C 20.6
(-3)
A 		52
(3)
A 		35.8
(-0.1)
A 		20.8
(-3)
A 		31
avr 33.3
(0.9) 		40.4
(3) 		32.2
(0.6) 		19.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 21.6
(0.6)
A 		14.3
(-3)
A 		20.3
(-0)
A 		20.7
(0.1)
A 		26.5
(3)
A 		18.9
(-0.7)
A 		12
B 36
(3)
A 		28.1
(1)
A 		12.5
(-3)
A 		13.8
(-2.7)
A 		33.4
(2.3)
A 		24.4
(0)
A 		24
C 40.3
(3)
A 		30.2
(0.6)
A 		31
(0.8)
A 		14.7
(-3)
P 		30.5
(0.7)
A 		18.6
(-2.1)
A 		26
avr 32.6
(3) 		24.2
(-0.1) 		21.3
(-1.2) 		16.4
(-3) 		30.1
(2.1) 		20.6
(-1.4) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8247
Sequence Type Exemplar sequence
Representative Public ID C39B5.11 NCBI
Target Description C39B5.11 /REP_DB=WormBase Gene ID /WP=CE23577 /GEN=srd-67 /TR=Q9N5W4 /GB=AAF39774.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065120 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-67) (srd-67) mRNA, complete cds. 11/11 None
C39B5.11 ENSEMBL cdna:known chromosome:CEL140:III:2244153:2245815:-1 gene:C39B5.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029852 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029861 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2244152-2245815(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-67
Ensembl C39B5.11
Entrez Gene 191825 Entrez gene
SwissProt Q9N5W4 EMBL-EBI
WormBase CE23577 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39774 Serpentine receptor, class d (delta) protein 67 [Caenorhabditis elegans] ref|NP_497521.1| Serpentine Receptor, class D (delta) family member (srd-67) [Caenorhabditis elegans] 0.0
blast NP_497487 Serpentine Receptor, class D (delta) family member (srd-66) [Caenorhabditis elegans] gb|AAF60514.2| Serpentine receptor, class d (delta) protein 66 [Caenorhabditis elegans] 1.0E-142
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-124
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497521.1 6 7-29,44-62,129-151,185-207,237-256,271-293
C39B5.11 6 7-29,44-62,129-151,185-207,237-256,271-293
Sequence
Target Sequence 
>C. ELEGANS:191359_AT
tcaccgttggaccttgttgtactccgtgcactatatattcccatttagttcacagatcct
aatgctaacggctccgtcgaaccacgctgcagtgcacaacgagaccttgatcctccaccc
ggagtacgattacactccctacttggattttggaggatttgaccccacggaagtagttta
tcaggcgaggaactggatgttcacaattgcaacgttctactcgccagtcattggaagcta
ctggaagcatcaggcgatgaagatgttgaaggttcatatgtcaccacaaacgtcgcctgc
ttcacgtgtaatgttacgtactttgatgaagggtctcaactttcaaattctgctgcccat
gatcagttatgtgccgcagcaactcgcatacctttacaaacaagtttcaggacaggagtt
cccatactcccagtacgctggaacattcctgggcactctgccgtgtttgctcgatccgat
ggttcaaatttactttataacaccttatcaaaacgctgttcgtcgatttctggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCGTTGGACCTTGTTGTACTCC 695 623 390 Antisense
TACTCCGTGCACTATATATTCCCAT 422 645 409 Antisense
TAATGCTAACGGCTCCGTCGAACCA 486 633 449 Antisense
GTGCACAACGAGACCTTGATCCTCC 624 477 481 Antisense
GATCCTCCACCCGGAGTACGATTAC 589 403 498 Antisense
TCGCCTGCTTCACGTGTAATGTTAC 589 599 682 Antisense
CAAATTCTGCTGCCCATGATCAGTT 75 195 733 Antisense
TTCCCATACTCCCAGTACGCTGGAA 626 697 808 Antisense
GTACGCTGGAACATTCCTGGGCACT 694 457 822 Antisense
GTGTTTGCTCGATCCGATGGTTCAA 85 487 852 Antisense
AAACGCTGTTCGTCGATTTCTGGAG 274 127 900 Antisense
Sequence Source Affymetrix Proprietary Database