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[191358_at] 7TM chemoreceptor, srh family

Description F37B4.3 /REP_DB=WormBase Gene ID /WP=CE24956 /GEN=srh-243 /TR=O45165 /GB=AAK18946.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 64      4grp_total > 12      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 30.7
(-2)
A 		36.3
(-1.6)
A 		18.6
(-3)
A 		93.4
(3)
P 		75
B 46
(2)
A 		16.3
(-1.3)
A 		1.6
(-3)
A 		54.8
(3)
P 		53
C 33.1
(-2.6)
A 		31.8
(-2.7)
A 		27.5
(-3)
A 		117.1
(3)
P 		90
avr 36.6
(-1.3) 		28.1
(-2) 		15.9
(-3) 		88.4
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 6.3
(-3)
A 		13.8
(-1.9)
A 		45.8
(2.8)
A 		47
(3)
A 		19.9
(-1)
A 		37.4
(1.6)
A 		41
B 38.1
(3)
P 		28.7
(-0.5)
A 		37.2
(2.7)
A 		22.1
(-3)
A 		22.1
(-3)
M 		37.3
(2.7)
A 		16
C 24.2
(-3)
A 		27.4
(-1.5)
P 		28.1
(-1.2)
A 		29.1
(-0.7)
A 		37
(3)
A 		24.4
(-2.9)
A 		13
avr 22.9
(-3) 		23.3
(-2.8) 		37
(3) 		32.7
(1.2) 		26.3
(-1.6) 		33
(1.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.2
(1.3)
A 		7.9
(-1)
A 		4.9
(-3)
A 		13.7
(3)
P 		9
B 14.7
(3)
A 		4
(-1.5)
A 		0.4
(-3)
A 		11.7
(1.7)
P 		14
C 11
(-1.9)
A 		9.1
(-3)
A 		9.6
(-2.7)
A 		19.8
(3)
P 		11
avr 12.3
(1.3) 		7
(-1.8) 		5
(-3) 		15.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-3)
A 		4.9
(-0.9)
A 		10
(1.9)
A 		11.9
(3)
A 		6
(-0.3)
A 		9.1
(1.4)
A 		11
B 13.3
(2.6)
P 		9.5
(-0.3)
A 		9
(-0.6)
A 		5.8
(-3)
A 		9
(-0.6)
M 		13.9
(3)
A 		8
C 9
(0)
A 		8.4
(-0.5)
P 		7.2
(-1.7)
A 		5.9
(-3)
A 		12
(3)
A 		8.2
(-0.7)
A 		6
avr 7.8
(-2.6) 		7.6
(-3) 		8.7
(-0.6) 		7.9
(-2.4) 		9
(0) 		10.4
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15654
Sequence Type Exemplar sequence
Representative Public ID F37B4.3 NCBI
Target Description F37B4.3 /REP_DB=WormBase Gene ID /WP=CE24956 /GEN=srh-243 /TR=O45165 /GB=AAK18946.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071378 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-243) (srh-243) mRNA, complete cds. 11/11 None
GENEFINDER00000026940 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2871190:2871933:1 11/11 None
F37B4.3 ENSEMBL cdna:known chromosome:CEL140:V:2870254:2871933:1 gene:F37B4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2870253-2871933(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-243
Ensembl F37B4.3
Entrez Gene 191891 Entrez gene
SwissProt O45165 EMBL-EBI
WormBase CE24956 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18946 Serpentine receptor, class h protein 243 [Caenorhabditis elegans] ref|NP_503779.1| Serpentine Receptor, class H family member (srh-243) [Caenorhabditis elegans] 0.0
blast AAB52309 Serpentine receptor, class h protein 244 [Caenorhabditis elegans] ref|NP_504872.1| Serpentine Receptor, class H family member (srh-244) [Caenorhabditis elegans] 1.0E-140
blast AAK18946 Serpentine receptor, class h protein 243 [Caenorhabditis elegans] ref|NP_503779.1| Serpentine Receptor, class H family member (srh-243) [Caenorhabditis elegans] 1.0E-117
blast AAB52309 Serpentine receptor, class h protein 244 [Caenorhabditis elegans] ref|NP_504872.1| Serpentine Receptor, class H family member (srh-244) [Caenorhabditis elegans] 7.0E-88
blast AAK18949 Serpentine receptor, class h protein 241 [Caenorhabditis elegans] ref|NP_503778.1| Serpentine Receptor, class H family member (srh-241) [Caenorhabditis elegans] 1.0E-78
blast AAK18949 Serpentine receptor, class h protein 241 [Caenorhabditis elegans] ref|NP_503778.1| Serpentine Receptor, class H family member (srh-241) [Caenorhabditis elegans] 3.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.7E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503779.1 7 20-42,63-82,97-119,139-158,193-215,249-271,281-298
F37B4.3 7 20-42,63-82,97-119,139-158,193-215,249-271,281-298
GENEFINDER00000026940 4 30-49,84-106,140-162,172-189
Sequence
Target Sequence 
>C. ELEGANS:191358_AT
atatcagaaaagcctacctcatcgctgtctatacttcaataccttttatatttctaccac
cattcctaactattcccgagcaagaaactgctcaaagctttatcttggctaaacttcctt
gtttgccaaaatttacatttaacgatgaagagctctttgtgttgagcattagtcctgtaa
taccactactttgcattgcatttgcatccttatttttggctgttccaattattacatttt
tctcgatgacactttatcacttgttaaccaaaaaaaagttggtcacactttccgcaaaga
cattggcaattcatagaaaatttctcaagtcggttagtattcagtcaatatctacagctg
gaattgtgttggtacctcttacaacttttatttgctttatgatgttttggtaccacaacc
aaaaattgaacaatttgggatacttggtcttgtcactacatggaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCAGAAAAGCCTACCTCATCGC 273 19 413 Antisense
CCTCATCGCTGTCTATACTTCAATA 709 267 429 Antisense
TTATATTTCTACCACCATTCCTAAC 516 677 458 Antisense
CATTCCTAACTATTCCCGAGCAAGA 453 217 473 Antisense
AACTGCTCAAAGCTTTATCTTGGCT 156 143 498 Antisense
TCTTGGCTAAACTTCCTTGTTTGCC 226 615 515 Antisense
AATACCACTACTTTGCATTGCATTT 364 171 591 Antisense
TGCATCCTTATTTTTGGCTGTTCCA 315 579 615 Antisense
TCTCGATGACACTTTATCACTTGTT 51 611 653 Antisense
TGGAATTGTGTTGGTACCTCTTACA 88 547 771 Antisense
CTTGGTCTTGTCACTACATGGAAGT 161 219 855 Antisense
Sequence Source Affymetrix Proprietary Database