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[191356_at] Erythrocyte band 7 protein

Description Y71H9A.2 /REP_DB=WormBase Gene ID /WP=CE19267 /TR=Q9XWC6 /GB=CAA21750.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Erythrocyte band 7 protein
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 15      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 60      6grp_total > 05      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 631.7
(3)
P 		294.1
(-3)
P 		355.8
(-1.9)
P 		354.2
(-1.9)
P 		338
B 736.2
(3)
P 		448.3
(-1)
P 		302.2
(-3)
P 		331.9
(-2.6)
P 		434
C 653.3
(3)
P 		351.7
(-2)
P 		292.4
(-3)
P 		355.3
(-2)
P 		361
avr 673.7
(3) 		364.7
(-2.2) 		316.8
(-3) 		347.1
(-2.5) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 524.5
(3)
P 		381.6
(0.3)
P 		264.1
(-1.8)
P 		344.7
(-0.3)
P 		300.4
(-1.2)
P 		201.6
(-3)
P 		323
B 488.5
(3)
P 		449.8
(2.1)
P 		257.7
(-2.3)
P 		227.5
(-3)
P 		313.2
(-1)
P 		239.5
(-2.7)
P 		261
C 574.8
(3)
P 		536.1
(2.4)
P 		319
(-1.2)
P 		247.7
(-2.4)
P 		229.9
(-2.7)
P 		211.9
(-3)
P 		363
avr 529.3
(3) 		455.8
(1.6) 		280.3
(-1.8) 		273.3
(-1.9) 		281.2
(-1.8) 		217.7
(-3) 		312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 230
(3)
P 		63.8
(-2.6)
P 		93
(-1.6)
P 		51.8
(-3)
P 		178
B 234.8
(3)
P 		110.7
(-1.5)
P 		70
(-3)
P 		70.7
(-3)
P 		165
C 216.3
(3)
P 		101.1
(-1.4)
P 		101.9
(-1.4)
P 		59.9
(-3)
P 		156
avr 227
(3) 		91.9
(-1.9) 		88.3
(-2) 		60.8
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 96.7
(0.3)
P 		135.7
(3)
P 		57.5
(-2.4)
P 		87.4
(-0.3)
P 		90.6
(-0.1)
P 		49.1
(-3)
P 		87
B 170
(3)
P 		149.7
(1.9)
P 		62.6
(-2.9)
P 		60.3
(-3)
P 		127.2
(0.7)
P 		89.3
(-1.4)
P 		110
C 213.1
(3)
P 		163.6
(1.2)
P 		81.2
(-1.8)
P 		49.8
(-3)
P 		74.4
(-2.1)
P 		70.9
(-2.2)
P 		163
avr 159.9
(3) 		149.7
(2.3) 		67.1
(-2.9) 		65.8
(-3) 		97.4
(-1) 		69.8
(-2.7) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16028
Sequence Type Exemplar sequence
Representative Public ID Y71H9A.2 NCBI
Target Description Y71H9A.2 /REP_DB=WormBase Gene ID /WP=CE19267 /TR=Q9XWC6 /GB=CAA21750.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Erythrocyte band 7 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077542(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077542 NCBI Caenorhabditis elegans STOmatin family member (sto-6) (sto-6) mRNA, complete cds. 11/11 None
GENEFINDER00000027350 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11632341:11636257:1 11/11 None
Y71H9A.2 ENSEMBL cdna:known chromosome:CEL140:X:11632328:11636429:1 gene:Y71H9A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027347 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11632340-11636257(+) 100.0 100.0
Public Domain and Genome References
Gene Title Erythrocyte band 7 protein
Gene Symbol sto-6
Ensembl Y71H9A.2
Entrez Gene 190619 Entrez gene
SwissProt Q9XWC6 EMBL-EBI
WormBase CE19267 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1630375_AT dm
DROSGENOME1:141626_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21750 Hypothetical protein Y71H9A.2 [Caenorhabditis elegans] ref|NP_509943.1| STOmatin family member (sto-6) [Caenorhabditis elegans] 1.0E-149
blast CAE70605 Hypothetical protein CBG17281 [Caenorhabditis briggsae] 1.0E-141
blast CAB76415 Hypothetical protein Y71H9A.3 [Caenorhabditis elegans] emb|CAB82215.1| Hypothetical protein Y71H9A.3 [Caenorhabditis elegans] ref|NP_509944.1| STOmatin family member (sto-4) [Caenorhabditis elegans] sp|Q22165|STO4_CAEEL Stomatin protein 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001107 EMBL-EBI Band 7 protein 2.0E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509943.1 1 33-55
Y71H9A.2 1 33-55
GENEFINDER00000027350 1 33-55
Sequence
Target Sequence 
>C. ELEGANS:191356_AT
agaacattgtcctttgaagtcccaccacaagagttactttcgaaagatgcggtgaccgtc
gctgtcgatgcagtcgtgttcttcagaatttcaaatgcaacaatatcagtaatcaacatc
gaagatgctgctagatctacaaagctacttgcacaaacgaccctccgtaacattcttgga
accaaaacccttacagaaatgttatctgatcgtgatgtcatttccctacagatgcaggca
actcttgacgaaacgacaatcccatggggcgtaaaagtcgaacgcgtcgagatgaaagat
gttcgtcttccgtaccaattgcaacgcgtaatggctgctgaagcagaagcgacaagagat
gcaatggctaaaataattgcagcagaaggagagaagaatgcgtcaacagctctcgcagaa
gcagctgatgtgatttcaatgtctccgtgtgcgattcaacttcgttatttgcaaacattg
aatagcataagctcggagaaaaacaacacaattgtattccccttcccaatggaaatgatg
tcccgtttcatcaagcgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACATTGTCCTTTGAAGTCCCAC 63 73 304 Antisense
GTCCCACCACAAGAGTTACTTTCGA 482 475 322 Antisense
GAAAGATGCGGTGACCGTCGCTGTC 43 361 345 Antisense
TCGATGCAGTCGTGTTCTTCAGAAT 199 603 368 Antisense
TGATCGTGATGTCATTTCCCTACAG 396 565 510 Antisense
GACGAAACGACAATCCCATGGGGCG 55 379 550 Antisense
TCGTCTTCCGTACCAATTGCAACGC 328 605 606 Antisense
CGTCAACAGCTCTCGCAGAAGCAGC 236 247 704 Antisense
TCTCCGTGTGCGATTCAACTTCGTT 368 611 745 Antisense
TTGTATTCCCCTTCCCAATGGAAAT 691 683 815 Antisense
GATGTCCCGTTTCATCAAGCGACAA 41 409 840 Antisense
Sequence Source Affymetrix Proprietary Database