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[191354_s_at]

Description T19E10.1A /REP_DB=WormBase Gene ID /WP=CE18264 /TR=Q22590 /GB=CAA86788.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transforming protein etc2
Cluster 6grp_total > 79      4grp_total > 59      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 34.1
(-3)
A 		75.5
(3)
A 		39.9
(-2.2)
A 		52.6
(-0.3)
A 		41
B 79.2
(1.7)
A 		67.6
(0.9)
A 		99
(3)
A 		8
(-3)
A 		91
C 89.5
(2.6)
A 		93.4
(3)
A 		80.8
(1.7)
A 		33.9
(-3)
A 		60
avr 67.6
(1.6) 		78.8
(3) 		73.2
(2.3) 		31.5
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 60.7
(-3)
A 		125.3
(-2.1)
A 		76.4
(-2.8)
A 		62.2
(-3)
A 		186.9
(-1.2)
P 		475.5
(3)
P 		415
B 113.5
(-1.2)
A 		95.5
(-1.7)
A 		50.4
(-3)
A 		56.2
(-2.8)
A 		172.5
(0.5)
P 		261.7
(3)
P 		211
C 145
(-0.5)
P 		52.8
(-2.8)
A 		45.2
(-3)
A 		99.7
(-1.6)
A 		180.9
(0.4)
P 		283.5
(3)
P 		238
avr 106.4
(-2) 		91.2
(-2.3) 		57.3
(-3) 		72.7
(-2.7) 		180.1
(-0.4) 		340.2
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 12.4
(0.2)
A 		16.4
(3)
A 		10.4
(-1.1)
A 		7.7
(-3)
A 		9
B 25.2
(3)
A 		16.7
(0.8)
A 		22.9
(2.4)
A 		1.7
(-3)
A 		24
C 29.6
(3)
A 		26.9
(2.3)
A 		28.1
(2.6)
A 		5.7
(-3)
A 		24
avr 22.4
(3) 		20
(2.2) 		20.5
(2.3) 		5
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 11.2
(-3)
A 		44.6
(-1.1)
A 		16.6
(-2.7)
A 		15.8
(-2.7)
A 		56.4
(-0.4)
P 		115.8
(3)
P 		105
B 39.5
(-1.1)
A 		31.8
(-1.6)
A 		12.2
(-3)
A 		14.9
(-2.8)
A 		70.1
(1.1)
P 		97.6
(3)
P 		85
C 53.7
(0)
P 		16.1
(-2.7)
A 		11.5
(-3)
A 		20.1
(-2.4)
A 		58.6
(0.4)
P 		94.9
(3)
P 		83
avr 34.8
(-1.6) 		30.8
(-1.8) 		13.4
(-3) 		16.9
(-2.8) 		61.7
(0.2) 		102.8
(3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191354_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3117
Sequence Type Exemplar sequence
Representative Public ID T19E10.1A NCBI
Target Description T19E10.1A /REP_DB=WormBase Gene ID /WP=CE18264 /TR=Q22590 /GB=CAA86788.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transforming protein etc2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063917(11), NM_063918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063917 NCBI Caenorhabditis elegans T19E10.1b (T19E10.1) mRNA, complete cds. 11/11 A 
NM_063918 NCBI Caenorhabditis elegans T19E10.1a (T19E10.1) mRNA, complete cds. 11/11 A 
SNAP00000020896 ENSEMBL cdna:SNAP chromosome:CEL140:II:10778853:10783176:-1 11/11 None
GENEFINDER00000020897 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10778853:10783201:-1 11/11 None
T19E10.1b ENSEMBL cdna:known chromosome:CEL140:II:10778335:10783199:-1 gene:T19E10.1 11/11 A 
T19E10.1a ENSEMBL cdna:known chromosome:CEL140:II:10778853:10783176:-1 gene:T19E10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10778849-10783173(-) 100.0 100.0
Public Domain and Genome References
Ensembl T19E10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54311 Hypothetical protein T19E10.1b [Caenorhabditis elegans] ref|NP_496318.1| T19E10.1b [Caenorhabditis elegans] 0.0
blast CAA86788 Hypothetical protein T19E10.1a [Caenorhabditis elegans] ref|NP_496319.1| T19E10.1a [Caenorhabditis elegans] 0.0
blast CAE59604 Hypothetical protein CBG03012 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 2.6E-4
Pfam IPR001357 EMBL-EBI BRCT 1.7E-7
Pfam IPR000219 EMBL-EBI DH domain 6.7E-18
Pfam IPR001357 EMBL-EBI BRCT 2.6E-4
Pfam IPR001357 EMBL-EBI BRCT 1.7E-7
Pfam IPR000219 EMBL-EBI DH domain 6.7E-18
Sequence
Target Sequence 
>C. ELEGANS:191354_S_AT
ttctactcgtcggatccatcagatatgaatgagatcaacgatgcgatggtttcggatatg
acaactcgatactttagaaatctttgcggagcgaaaccacaatatggacacggcagtcag
atgaacattacggaatggtcacacaatgagtcgtttatgccaccaccacagtcacagagt
cgaatgcgacgagcgttcagtaatgctcaactcacacttgccaccacgctgggctttggc
agaaatcagagtcgaaataacttgggacaaattaacgagaacacgacatttctgcagtct
cccagagtttcgtgtgatccagcagctctcgcaaacatgacgtcagtcggcggattgcct
ggatgccaaagcgaatctgaatcgacgccaaagcgaggaattcgttctcgcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTACTCGTCGGATCCATCAGATA 247 691 2233 Antisense
CACAATGAGTCGTTTATGCCACCAC 383 193 2374 Antisense
CACCACCACAGTCACAGAGTCGAAT 627 201 2393 Antisense
AGTCGAATGCGACGAGCGTTCAGTA 16 61 2410 Antisense
GCGTTCAGTAATGCTCAACTCACAC 634 291 2425 Antisense
CACCACGCTGGGCTTTGGCAGAAAT 695 201 2454 Antisense
GAACACGACATTTCTGCAGTCTCCC 571 351 2511 Antisense
GAGTTTCGTGTGATCCAGCAGCTCT 407 399 2537 Antisense
CAGCAGCTCTCGCAAACATGACGTC 272 205 2552 Antisense
GGATTGCCTGGATGCCAAAGCGAAT 319 509 2584 Antisense
AAAGCGAGGAATTCGTTCTCGCCTC 291 125 2622 Antisense
Sequence Source Affymetrix Proprietary Database