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[191353_at] 7TM chemoreceptor, srd family

Description T19H12.4 /REP_DB=WormBase Gene ID /WP=CE26002 /GEN=srd-33 /TR=O01609 /GB=AAC69029.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_high1_10_10 > 10      4grp_high_8_8 > 24      6grp_total > 22      4grp_total > 39      6grp_cgc > 60      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 174.7
(3)
P 		82.8
(-3)
A 		109.2
(-1.3)
A 		125.2
(-0.2)
A 		92
B 182.3
(3)
P 		92.5
(-3)
P 		97.9
(-2.6)
P 		151.1
(0.9)
P 		90
C 211.5
(3)
P 		100.1
(-1.9)
P 		105
(-1.7)
P 		76.3
(-3)
P 		135
avr 189.5
(3) 		91.8
(-3) 		104
(-2.3) 		117.5
(-1.4) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 152.4
(3)
P 		146
(2.6)
P 		152.3
(3)
P 		126.7
(1.4)
P 		128.5
(1.5)
P 		56.6
(-3)
A 		96
B 142.4
(1.7)
P 		163.7
(2.9)
P 		164
(2.9)
P 		164.9
(3)
P 		103.2
(-0.7)
P 		64.2
(-3)
M 		101
C 180
(2.4)
P 		158.3
(1.3)
P 		161.1
(1.4)
A 		190.4
(3)
P 		79.8
(-3)
P 		89.8
(-2.5)
P 		111
avr 158.3
(2.8) 		156
(2.7) 		159.1
(2.9) 		160.7
(3) 		103.8
(-0.8) 		70.2
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 63.6
(3)
P 		18
(-3)
A 		28.5
(-1.6)
A 		18.3
(-3)
A 		46
B 58.1
(3)
P 		22.8
(-3)
P 		22.7
(-3)
P 		32.2
(-1.4)
P 		35
C 70
(3)
P 		28.8
(-1.3)
P 		36.6
(-0.5)
P 		12.9
(-3)
P 		57
avr 63.9
(3) 		23.2
(-2.7) 		29.3
(-1.9) 		21.1
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 28.1
(-0.7)
P 		51.9
(3)
P 		33.2
(0.1)
P 		32.1
(-0.1)
P 		38.8
(0.9)
P 		13.8
(-3)
A 		38
B 49.5
(2)
P 		54.5
(3)
P 		39.8
(0.1)
P 		43.7
(0.9)
P 		41.9
(0.5)
P 		24
(-3)
M 		31
C 66.7
(3)
P 		48.3
(0.3)
P 		41
(-0.8)
A 		38.3
(-1.2)
P 		25.8
(-3)
P 		30
(-2.4)
P 		41
avr 48.1
(2.3) 		51.6
(3) 		38
(0.2) 		38
(0.2) 		35.5
(-0.3) 		22.6
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191353_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15444
Sequence Type Exemplar sequence
Representative Public ID T19H12.4 NCBI
Target Description T19H12.4 /REP_DB=WormBase Gene ID /WP=CE26002 /GEN=srd-33 /TR=O01609 /GB=AAC69029.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071903 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-33) (srd-33) mRNA, complete cds. 11/11 None
SNAP00000027974 ENSEMBL cdna:SNAP chromosome:CEL140:V:4872117:4874014:1 11/11 None
GENEFINDER00000027985 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4865549:4874014:1 11/11 None
T19H12.4 ENSEMBL cdna:known chromosome:CEL140:V:4872117:4874014:1 gene:T19H12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4872217-4874014(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-33
Ensembl T19H12.4
Entrez Gene 191816 Entrez gene
SwissProt O01609 EMBL-EBI
WormBase CE13758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69029 Serpentine receptor, class d (delta) protein 33 [Caenorhabditis elegans] ref|NP_504304.2| Serpentine Receptor, class D (delta) family member (srd-33) [Caenorhabditis elegans] sp|O01609|SRD33_CAEEL Serpentine receptor class delta-33 (Protein srd-33) 1.0E-174
blast AAC69029 Serpentine receptor, class d (delta) protein 33 [Caenorhabditis elegans] ref|NP_504304.2| Serpentine Receptor, class D (delta) family member (srd-33) [Caenorhabditis elegans] sp|O01609|SRD33_CAEEL Serpentine receptor class delta-33 (Protein srd-33) 1.0E-173
blast CAE64211 Hypothetical protein CBG08844 [Caenorhabditis briggsae] 1.0E-134
blast AAC69030 Serpentine receptor, class d (delta) protein 32 [Caenorhabditis elegans] ref|NP_504303.1| Serpentine Receptor, class D (delta) family member (srd-32) [Caenorhabditis elegans] sp|O01608|SRD32_CAEEL Serpentine receptor class delta-32 (Protein srd-32) 1.0E-124
blast CAE64210 Hypothetical protein CBG08843 [Caenorhabditis briggsae] 7.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504304.2 7 26-48,60-82,113-135,148-170,204-226,252-274,289-311
T19H12.4 7 26-48,60-82,113-135,148-170,204-226,252-274,289-311
SNAP00000027974 7 26-48,60-82,113-135,148-170,204-226,252-274,289-311
GENEFINDER00000027985 15 5-24,113-135,139-161,174-196,230-252,279-301,316-338,351-373,388-410,422-444,475-497,510-532,566-588,614-636,651-673
Sequence
Target Sequence 
>C. ELEGANS:191353_AT
cttctttccatttctcatatttgccagttgctcgaatattgccatttcgtcgtcattgtc
attcaacacggcggttcttgacggaatggttgagaatctggagagctatcacatggtgct
caccaccgaaatttccaatcatccttctctaattattctgacgcttgccgtgacctgtgg
tcttgtgcctatttattttgtgatgtattggtgtcggcaccaaattcacaagacgttgaa
gcagacgagatccgttcatagtccgtcgacaagggataatgcaaggagattagttcgtgc
actaacaatccaatcaattattcctctggtgtccgtcttccctgcatcaattttctggtg
tctttcccagttgggatttgtggagcctacaatgtacagctactttattattccgtgtct
ttctttgggatgtatagccgatcctgtagtcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTTCCATTTCTCATATTTGCC 334 221 420 Antisense
ATTGCCATTTCGTCGTCATTGTCAT 544 7 457 Antisense
GTCATTCAACACGGCGGTTCTTGAC 542 467 477 Antisense
GAAATTTCCAATCATCCTTCTCTAA 586 363 547 Antisense
CTCTAATTATTCTGACGCTTGCCGT 328 229 566 Antisense
ACCTGTGGTCTTGTGCCTATTTATT 49 89 592 Antisense
ACGAGATCCGTTCATAGTCCGTCGA 24 93 664 Antisense
ATCAATTATTCCTCTGGTGTCCGTC 608 25 732 Antisense
TCTTCCCTGCATCAATTTTCTGGTG 609 617 755 Antisense
GCTACTTTATTATTCCGTGTCTTTC 382 303 818 Antisense
ATGTATAGCCGATCCTGTAGTCACT 42 47 849 Antisense
Sequence Source Affymetrix Proprietary Database