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[191352_at] 7TM chemoreceptor, srh family

Description F37B4.1 /REP_DB=WormBase Gene ID /WP=CE26748 /GEN=srh-127 /TR=O45171 /GB=AAK18952.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 92      4grp_total > 11      6grp_cgc > 98      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 11.5
(-3)
A 		20.8
(-1.6)
A 		29.5
(-0.3)
A 		51.7
(3)
A 		40
B 27.4
(-2.8)
A 		46.3
(-1.2)
A 		24.7
(-3)
A 		96.4
(3)
A 		72
C 37
(-0.1)
A 		10.2
(-2.5)
A 		5.1
(-3)
A 		71.6
(3)
A 		67
avr 25.3
(-2.4) 		25.8
(-2.3) 		19.8
(-3) 		73.2
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 33.3
(3)
A 		7.6
(-2.4)
A 		14.2
(-1)
A 		4.5
(-3)
A 		33.2
(3)
A 		15.7
(-0.7)
A 		29
B 5.2
(-3)
A 		32.1
(3)
A 		32
(3)
A 		5.3
(-3)
A 		22.6
(0.9)
A 		9.9
(-2)
A 		27
C 39.4
(2.1)
A 		24.6
(-0.4)
A 		23.9
(-0.5)
A 		45.1
(3)
A 		38.9
(2)
A 		9.1
(-3)
A 		36
avr 26
(1.3) 		21.4
(-0.1) 		23.4
(0.5) 		18.3
(-1) 		31.6
(3) 		11.6
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 4.2
(-3)
A 		4.5
(-2.5)
A 		7.7
(3)
A 		7.6
(2.8)
A 		4
B 8.7
(-1.8)
A 		11.4
(-0.7)
A 		5.7
(-3)
A 		20.6
(3)
A 		15
C 12.2
(3)
A 		2.9
(-2.4)
A 		1.8
(-3)
A 		12.1
(2.9)
A 		10
avr 8.4
(-0.6) 		6.3
(-2.1) 		5.1
(-3) 		13.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.1
(0.4)
A 		2.7
(-1.9)
A 		3.1
(-1.7)
A 		1.1
(-3)
A 		10
(3)
A 		3.8
(-1.2)
A 		9
B 1.8
(-2.7)
A 		10.7
(3)
A 		7.8
(1.1)
A 		1.4
(-3)
A 		9.2
(2)
A 		3.7
(-1.5)
A 		9
C 14.6
(3)
A 		7.5
(-0.7)
A 		6.1
(-1.4)
A 		9.1
(0.1)
A 		12.6
(2)
A 		3.1
(-3)
A 		12
avr 7.5
(0.4) 		7
(-0) 		5.7
(-1.1) 		3.9
(-2.7) 		10.6
(3) 		3.5
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15268
Sequence Type Exemplar sequence
Representative Public ID F37B4.1 NCBI
Target Description F37B4.1 /REP_DB=WormBase Gene ID /WP=CE26748 /GEN=srh-127 /TR=O45171 /GB=AAK18952.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071385 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-127) (srh-127) mRNA, complete cds. 11/11 A 
F37B4.1 ENSEMBL cdna:known chromosome:CEL140:V:2893103:2895411:1 gene:F37B4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2893102-2893694(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-127
Ensembl F37B4.1
Entrez Gene 191882 Entrez gene
SwissProt O45171 EMBL-EBI
WormBase CE26748 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18952 Serpentine receptor, class h protein 127 [Caenorhabditis elegans] ref|NP_503786.1| Serpentine Receptor, class H family member (srh-127) [Caenorhabditis elegans] 0.0
blast CAE62378 Hypothetical protein CBG06464 [Caenorhabditis briggsae] 1.0E-111
blast F88979 protein F37B4.1 [imported] - Caenorhabditis elegans 2.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503786.1 7 39-61,73-95,105-124,145-167,201-223,246-268,281-303
F37B4.1 7 39-61,73-95,105-124,145-167,201-223,246-268,281-303
Sequence
Target Sequence 
>C. ELEGANS:191352_AT
acagattttctctctacaactctacactctatgtctttttttcaatatccatctcatatt
tttggcgcaatcgttatcatattccacacaccccatggaatggcttctgtgaagtggtca
ctgttgagcctccacgtttggagctcaattttagatgtctactggagtctactcgcgatt
ccatttgtcactttcccctatatggctggaaatggaattggagtattatcagagctaggt
ctagatactagatttcaagtttatctatctgtcaccatagttgccgtactcgtggctacc
atggttaaggtgtacgagaatcgatggtttttgctcgctcgaaatctgaaaaagtggaaa
aaaattcgaaaaaagttatgtttgatacactattttgcaagttgcacatatttcattcca
ctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGATTTTCTCTCTACAACTCTAC 17 109 70 Antisense
ACAACTCTACACTCTATGTCTTTTT 330 113 85 Antisense
GTCTTTTTTTCAATATCCATCTCAT 308 469 102 Antisense
GGCGCAATCGTTATCATATTCCACA 46 543 133 Antisense
CACACACCCCATGGAATGGCTTCTG 171 195 154 Antisense
TGAAGTGGTCACTGTTGAGCCTCCA 233 575 179 Antisense
TACTGGAGTCTACTCGCGATTCCAT 465 647 229 Antisense
GTCACTTTCCCCTATATGGCTGGAA 579 465 256 Antisense
CCATAGTTGCCGTACTCGTGGCTAC 37 271 344 Antisense
GAATCGATGGTTTTTGCTCGCTCGA 683 329 387 Antisense
GTTGCACATATTTCATTCCACTTTT 486 439 470 Antisense
Sequence Source Affymetrix Proprietary Database